SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8424

Length: 357 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene8424
ACTTGCCAAGCTCCTTATGCGGGCTACTCACCTGTGCAGGCTGCTGTAGGTATTGCAGCATGTGGACTACGGCAAGATATCCCTTCAGATTGTCCTCCTCTTCTGAAGTCTTTGATGCAGAGATGCTGGAGCAGCTATCCTCTTCAGAGACCTCATTTTTCTGAAATTCTTAATGTATTACGTGGTTTGGCTTTATAGTTAAGTTGATCATGACTTCCATGTTATGAGCAGTTTTTGGGCTGTTAATGTGTTTAACCTAATGTGCTTATCTGGCTTGAAAATCTGCTTATAACAGCGCAGTCATCTAAAATTCATGTATGGTAAGGGGTCTTTCAAACTTCAACTGTAATTTACATT

Ace file of the UniGene biog3_v1.0_unigene8424 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3888	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] dbj\|BAF01411.1\| protein kinase like protein [Arabidopsis thaliana] gb\|AED97062.1\| protein kinase family protein [Arabidopsis thaliana]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	kinase family protein	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	0.0	69%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTN3

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 34 aas, putative chimeric sequence, your sequence is shorter than subject: 66 - 420

Fln protein: TCQAPYAGYSPVQAAVGIAACGLRQDIPSDCPPLLKSLMQRCWSSYPLQRPHFSEILNVLRGLAL*

Protein Length: 67

Fln nts: ACTTGCCAAGCTCCTTATGCGGGCTACTCACCTGTGCAGGCTGCTGTAGGTATTGCAGCATGTGGACTACGGCAAGATATCCCTTCAGATTGTCCTCCTCTTCTGAAGTCTTTGATGCAGAGATGCTGGAGCAGCTATCCTCTTCAGAGACCTCATTTTTCTGAAATTCTTAATGTATTACGTGGTTTGGCTTTATAG___TTAAGTTGATCATGACTTCCATGTTATGAGCAGTTTTTGGGCTGTTAATGTGTTTAACCTAATGTGCTTATCTGGCTTGAAAATCTGCTTATAACAGCGCAGTCATCTAAAATTCATGTATGGTAAGGGGTCTTTCAAACTTCAACTGTAATTTACATT

Fln Alignment:

Contig8424___TCQAPYAGYSPVQAAVGIAACGLRQDIPSDCPPLLKSLMQRCWSSYPLQRPHFSEILNVL
C0PTN3_________________TGMLPFQNMTAVQAAFAVVNKGVRPAIPQDCPPALAEIMSRCWDANPDVRPSFSEVVRML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain