SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8413

Length: 334 nt

UniGene Fasta

>biog3_v1.0_unigene8413
CTTCAGTATATTCATGGCATAGGGCGCACAACAGCTCGGCAGGTGTTGTATGATTTGGCCATGTAGAACAAGGTTACGCGTGAACTGAACGAGAATGAATTGACCAGAGTTCGAGATGAGGTCTCCAAGTACATGATTGAAGGAGATCTGAGACGGTTTAACAACCTTGCTATCAGGAGATTGATAGAAATCCAGTGCTACAGAGGAAGGCGCCATGTTGCAGGTTTACCCTGCAGAGGACAACGCACTAAAAACAATTGCCGGACATTAAAAGGGAAGAGGGTTTCAATACCAGGAAAGAAGAAGGCTCCTAAATAAGTCTTAATTATACATT

Ace file of the UniGene biog3_v1.0_unigene8413

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10830	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	30S ribosomal protein S13 [Arabidopsis thaliana] sp\|P42732.1\|RR13_ARATH RecName: Full=30S ribosomal protein S13, chloroplastic; AltName: Full=CS13; Flags: Precursor emb\|CAA79013.1\| chloroplast 30S ribosomal protein S13 [Arabidopsis thaliana] emb\|CAA88028.	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	30s ribosomal protein s13	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	80%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	80%
Blast2go	RNA binding	GO:0003723	Molecular Function	80%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	80%
Blast2go	small ribosomal subunit	GO:0015935	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S13	IPR001892	-	0.0	-
Sma3	Ribosomal protein S13, conserved site	IPR018269	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRD6

Fln msg: your sequence is shorter than subject: 106 - 169

Fln protein: LQYIHGIGRTTARQVLYDLAM*NKVTRELNENELTRVRDEVSKYMIEGDLRRFNNLAIRRLIEIQCYRGRRHVAGLPCRGQRTKNNCRTLKGKRVSIPGKKKAPK*

Protein Length: 107

Fln nts: CTTCAGTATATTCATGGCATAGGGCGCACAACAGCTCGGCAGGTGTTGTATGATTTGGCCATGTAGAACAAGGTTACGCGTGAACTGAACGAGAATGAATTGACCAGAGTTCGAGATGAGGTCTCCAAGTACATGATTGAAGGAGATCTGAGACGGTTTAACAACCTTGCTATCAGGAGATTGATAGAAATCCAGTGCTACAGAGGAAGGCGCCATGTTGCAGGTTTACCCTGCAGAGGACAACGCACTAAAAACAATTGCCGGACATTAAAAGGGAAGAGGGTTTCAATACCAGGAAAGAAGAAGGCTCCTAAATAA___GTCTTAATTATACATT

Fln Alignment:

Contig8413___LQYIHGIGRTTARQVLYDLAM*NKVTRELNENELTRVRDEVSKYMIEGDLRRFNNLAIRRLIEIQCYRGRRHVAGLPCRGQRTKNNCRTLKGKRVSIPGKKKAPK
A9NRD6_________________LQYIHGIGRTTARQVLYDLGMENKVTRELNESELTRVRDEVSKYMIEGDLRRFNNLAIRRLIEIQCYRGRRHVAGLPCRGQRTKNNCRTLKGKRVSIAGKKKAPK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
114	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain