SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8407

Length: 435 nt

UniGene Fasta

>biog3_v1.0_unigene8407
AATGTCTTTGCTTCATTTGTAACAAACCTCAGGGACCTGAGCAATCATGCATGAGTGACACAGAGGAGATCGTAGAGGTAGATCAAGAGGAGGTCCTTTTGGATTCTCAGATGAGGATTCCTCTTTTATAGATAAGTCCATGGATTCTTATGAGGATGCCTTTGAGGAGCATGAGCAATCACGTGGAAGTTGGGGACAAAGGCTCCATTTTTGCAAGGATTATCTTTAGATTGGCTTAGAAATCGCTCTAAATGGGCTGTGATCAGTAATGGCTCGGCTATTGATTCATGGAACTCTCCATGTAACTATCTTCGAGGCAGATTCACTGAGTGATCCTGGTTGAGTGACGGGAGGAGCTCCCAAGTCCTTCAGAAAGGTAAAAAATGGCGTAATTTGAGTTCTAAGATATAGAACGATCGAATGCTCTGTGATTCA

Ace file of the UniGene biog3_v1.0_unigene8407

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6187	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Exostosin family protein [Arabidopsis thaliana] gb\|AAP04155.1\| unknown protein [Arabidopsis thaliana] gb\|AEE83357.1\| Exostosin family protein [Arabidopsis thaliana]	-	-	5.0e-18	52%
FL-Next	sp=Phospholipase D alpha 1; Zea mays (Maize).	-	-	0.0	63%
Blast2go	galactosyltransferase-like protein	-	-	4.55941e-28	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	4.55941e-28	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Exostosin-like	IPR004263	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q43270

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 756 aas, your sequence is shorter than subject: 43 - 812

Fln protein: MARLLIHGTLHVTIFEADSLSDPG*VTGGAPKSFRKVKNGVI*

Protein Length: 44

Fln nts: AATGTCTTTGCTTCATTTGTAACAAACCTCAGGGACCTGAGCAATCATGCATGAGTGACACAGAGGAGATCGTAGAGGTAGATCAAGAGGAGGTCCTTTTGGATTCTCAGATGAGGATTCCTCTTTTATAGATAAGTCCATGGATTCTTATGAGGATGCCTTTGAGGAGCATGAGCAATCACGTGGAAGTTGGGGACAAAGGCTCCATTTTTGCAAGGATTATCTTTAGATTGGCTTAGAAATCGCTCTAAATGGGCTGTGATCAGTA_-_ATGGCTCGGCTATTGATTCATGGAACTCTCCATGTAACTATCTTCGAGGCAGATTCACTGAGTGATCCTGGTTGAGTGACGGGAGGAGCTCCCAAGTCCTTCAGAAAGGTAAAAAATGGCGTAATTTGAGTTCTAAGATATAGAACGATCGAATGCTCTGTGATTCA

Fln Alignment:

Contig8407___MARLLIHGTLHVTIFEADSLSDPG*VTGGAPKSFRKVKNGV
Q43270_________________MAQILLHGTLHATIFEAESLSNPHRATGGAPKFIRKLVEGI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain