SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8359

Length: 234 nt

UniGene Fasta

>biog3_v1.0_unigene8359
TGCATTGGAATTGTGCATGGAGGCACTTGAGGAGATCCAAAAGCGGTTTACAATGATTTTCCTGCACATCCCAAGGAAGAACTCTATCAATTTGCCACACCCTCAACAATGAAACCAACACAGTGGAGTTACCCTGGAGGTGGTCTCAATCAGATTCCAGGAGAATGCACCATATCAGGAGATGTCAGGCTAACGCCATTTTACAGTTGTGCTGATGTTGTAAAGAAATACATT

Ace file of the UniGene biog3_v1.0_unigene8359

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6488	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Acetylornithine deacetylase, putative n=1 Tax=Ricinus communis RepID=B9S1F8_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	acetylornithine deacetylase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acetylornithine deacetylase.	EC:3.5.1.16	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Arginine and proline metabolism	00330	87%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	87%
Blast2go	Metabolic pathways	01100	87%
Blast2go	Biosynthesis of secondary metabolites	01110	87%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	87%
Blast2go	metallopeptidase activity	GO:0008237	Molecular Function	87%
Blast2go	acetylornithine deacetylase activity	GO:0008777	Molecular Function	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase M20	IPR002933	-	0.0	-
Sma3	Peptidase M20, dimerisation	IPR011650	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUW9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 129 aas, your sequence is shorter than subject: 78 - 431

Fln protein: CIGIVHGGT*GDPKAVYNDFPAHPKEELYQFATPSTMKPTQWSYPGGGLNQIPGECTISGDVRLTPFYSCADVVKKYI

Protein Length: 79

Fln nts: TGCATTGGAATTGTGCATGGAGGCACTTGAGGAGATCCAAAAGCGGTTTACAATGATTTTCCTGCACATCCCAAGGAAGAACTCTATCAATTTGCCACACCCTCAACAATGAAACCAACACAGTGGAGTTACCCTGGAGGTGGTCTCAATCAGATTCCAGGAGAATGCACCATATCAGGAGATGTCAGGCTAACGCCATTTTACAGTTGTGCTGATGTTGTAAAGAAATACATT

Fln Alignment:

Contig8359___KAVYNDFPAHPKEELYQFATPSTMKPTQWSYPGGGLNQIPGECTISGDVRLTPFYSCADVVKK
A9NUW9_________________KRFYNDFPAHPKEELYQFATPSTMKPTQWSYPGGGLNQIPGECTISGDVRLTPFYSCADVVKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain