SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8328

Length: 1294 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene8328

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6746	84/84

Source	Descriptions	Term	Type	Identity
AutoFact	Cinnamoyl-CoA reductase, putative n=1 Tax=Ricinus communis RepID=B9SF82_RICCO	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	cinnamoyl reductase	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	3-beta-hydroxy-Delta(5)-steroid dehydrogenase.	EC:1.1.1.145	-	0.0	66%

Source	KEGGs	Term	Identity
Blast2go	Steroid hormone biosynthesis	00140	66%
Blast2go	Biosynthesis of terpenoids and steroids	01062	66%
Blast2go	Biosynthesis of plant hormones	01070	66%
Blast2go	Metabolic pathways	01100	66%

Source	GOs	Term	Type	Identity
Blast2go	steroid biosynthetic process	GO:0006694	Biological Process	66%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	66%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	66%
Blast2go	binding	GO:0005488	Molecular Function	66%
Blast2go	3-beta-hydroxy-delta5-steroid dehydrogenase activity	GO:0003854	Molecular Function	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	3-beta hydroxysteroid dehydrogenase/isomerase	IPR002225	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSE4

Fln msg:

Fln protein: MAIVKTAPICPGHHDWNRLPKEIKPDTFRSSSQMAKMVCVTNGTSFLGLWIVRQLLLRGYMVRVTVHNTGELQRVGEMEEFALYSANNKLTGVVANVVSDSTAALCEAFDGCYGVFHTSSFIDPHGLSGYTEHMVNLEVKGAEKTVEACCMTSSVRRCVFTSSLTACVWQRYGFSEDCDFVVDENCWSDQHLCREKKLWLALSKTMSEKAAWRVAEERGGVNLVTLCPALLTGPAFSASCASSAVAYLKGAREMYERNLLATVDVRRAAEAHVCVYEEMEIGASGRYICFDKVITRPEDARDLEKKLNMGLGFSADENSEENRSSQYHIGSHRIFNAKLRRILDLSASGRSCRRESE*

Protein Length: 359

Fln nts: CGGGGGTCAACTCTGCCTTGGAGCTTGCACTCTGTTCTCCC_-_ATGGCGATCGTGAAGACTGCACCCATCTGCCCAGGCCACCATGACTGGAACCGATTGCCCAAGGAGATCAAACCAGACACCTTCAGATCTTCATCACAGATGGCCAAGATGGTCTGTGTCACAAATGGGACTTCGTTTCTTGGTCTCTGGATTGTCAGACAGTTGCTGCTCAGAGGATACATGGTTCGGGTCACTGTCCATAATACAGGGGAATTGCAGAGGGTGGGAGAGATGGAGGAGTTTGCCTTGTACTCAGCCAACAATAAACTCACTGGTGTGGTGGCAAATGTGGTCTCTGATTCTACTGCTGCTCTCTGTGAAGCTTTTGATGGGTGTTATGGGGTGTTTCATACATCTTCCTTCATTGATCCACATGGTCTATCTGGATACACGGAGCATATGGTGAATTTAGAAGTGAAAGGGGCAGAAAAAACAGTGGAAGCATGCTGCATGACCTCCTCTGTGAGGAGGTGTGTGTTCACATCTTCATTGACTGCCTGTGTTTGGCAACGTTATGGATTCAGTGAGGATTGTGATTTTGTTGTGGATGAAAATTGCTGGAGTGATCAGCACCTTTGCAGGGAAAAGAAGCTCTGGCTTGCCCTGTCAAAGACCATGTCCGAGAAAGCTGCCTGGAGAGTTGCAGAAGAAAGGGGAGGCGTGAATTTGGTGACCCTTTGTCCTGCCCTATTAACGGGGCCTGCGTTTTCTGCATCTTGCGCCTCATCCGCTGTTGCTTATCTCAAAGGTGCTAGAGAGATGTACGAGAGGAATCTGCTGGCGACAGTGGACGTAAGGAGGGCAGCAGAGGCTCACGTCTGTGTGTATGAAGAGATGGAGATTGGGGCCAGTGGAAGATATATTTGCTTTGATAAGGTCATAACCAGGCCTGAGGATGCCAGAGATTTGGAGAAGAAACTCAATATGGGATTGGGTTTTTCTGCAGATGAGAATTCTGAAGAGAACAGATCGTCTCAGTATCATATCGGATCTCATCGGATTTTCAATGCCAAGTTGAGGCGAATCCTGGATCTGTCGGCTTCTGGACGGTCCTGCAGACGTGAGAGTGAGTGA___AGAAAGTCTGAAAAGTAGGCTAAAATCTAATTGGCCATGTTTTCTGAGAAATCAATATGTTCCTATCTAGCACATGCATGGCTTGAATGAGGATGTACAGAAAATAACTTTAAATAGTTGTCATGTCAGAGAGTACAGAAGTCATGAAATGAGATTTTGGTTTTGTTTTACAGTACATT

Fln Alignment:

Contig8328___MAIVKTAPICPGHHDWNRLPKEIKPDTFRSSSQMAKMVCVTNGTSFLGLWIVRQLLLRGYMVRVTVHNTGELQRVGEMEEFALYSANNKLTGVVANVVSDSTAALCEAFDGCYGVFHTSSFIDPHGLSGYTEHMVNLEVKGAEKTVEACCMTSSVRRCVFTSSLTACVWQRYGFSEDCDFVVDENCWSDQHLCREKKLWLALSKTMSEKAAWRVAEERGGVNLVTLCPALLTGPXXXXXXXXXXXXYLKGAREMYERNLLATVDVRRAAEAHVCVYEEMEIGASGRYICFDKVITRPEDARDLEKKLNMGLGFSADENS---EENRSSQYHIGSHRIFNAKLRRILDL
A9NSE4_________________MAIVKTAPIHQGHHDWKRLPKEMKEDSFRSSSQMAKMVCVTNGTSFLGLWIVRQLLLRGYIVRLTAHNTGELQKVEEMEEFALYSANNKLSGVVVNVATDSTASLCEAFDGCYGVFHTSSFIDPHGLSGYTEHMVNLEVKGAEKTVEACSLTSSVRRCVFTSSLTACTWQRDGFSEDGDFVVDEKCWSDQHLCREKKLWLALSKTMSEKAAWRAAEESGGVNLVTVCPALLTGPAFSASCASSAVAYLKGAREMYEKNLLATVDVRRAAEAHVCVYEEMEIGGSGRYICFDKVITRPEDARDLEKKLNMGLGFSADEDSGDRDEYRSSQSHIGSHRIFNAKLRRIMDL

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
56			66	33	0.997452
57	66		33		0.997452
58		66		33	0.997452
176		75	25		0.996473
191	20		80		0.995493
193		20		80	0.995493
194	20			80	0.995493
195			80	20	0.995493
406	20			80	0.995493
409	80			20	0.995493
434	80		20		0.995493
463	25		75		0.996473
468			75	25	0.996473
470	66			33	0.997452
632	88	11			0.923564
633	11		88		0.923564
634		88		11	0.923564
654			87	12	0.992554
655	87			12	0.992554
673			85	14	0.993533
676	16			83	0.994512
677		16	83		0.994512
678	16		83		0.994512
679	83			16	0.994512
680			83	16	0.994512
695		75	25		0.996473
709	25			75	0.996473
710		25		75	0.996473
711	25		75		0.996473
712	25		50	25	0.995533
717	20	80			0.995493
719	20			80	0.995493
812			80	20	0.995493
814	80			20	0.995493
1001	20		80		0.995493
1002	80	20			0.995493
1004			80	20	0.995493
1005	80			20	0.995493
1014		80	20		0.995493
1021			80	20	0.995493
1041	12		87		0.992554
1042		12	87		0.992554
1118	85		14		0.993533
1151	14		85		0.993533
1153	14	85			0.993533
1154	85			14	0.993533
1227	40			60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain