SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8297

Length: 1089 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene8297 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene150	16/17

Source	Descriptions	Term	Type	Identity
AutoFact	rhomboid-related intramembrane serine protease-like protein [Arabidopsis thaliana] ref\|NP_001078681.1\| rhomboid-related intramembrane serine protease-like protein [Arabidopsis thaliana] dbj\|BAB10141.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAS	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	rhomboid-related intramembrane serine protease-like protein	-	-	59%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	0.0	59%
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S54, rhomboid	IPR002610	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX52

Fln msg: Overlapping hits, possible frame ERROR between 723 and 657, Distance to subject end: 63 aas,

Fln protein: MPCAESKSTEEDEQLKMATELDILDNYIKKLNPGRQDAQKDDIPENNRSDKTRNSLTANEAESARDFFSSVNKIIKDLNLGSEVVDEWIKDLDSEVNSKLAEDNKDVPDGLVSSTDVSYNSYLINTLAAINIAVFLFELASPVKSTDAAILSLPLLCGAKINELILxxxxxxxxxxxxxxxxxxxxxxxxWAILTFGPLVDRAYGSFAFCMIYFLGGVCGNLMSFFHTPDATVGGTGPVVAIIGSWIIYLFQNREALGEEMVDSLIQKVAVASVLSVALSYLTPIDDYTHLGAACAGLIFGILICPVVPVH

Protein Length: 312

Fln nts: TCACACAAACAGTTGGGTATCTTAGATTCTTATTTCAACAAACTTCATGGCAAAGCACATCAGGGCCAGGGTGTAGCAGCTAAATCTGATCAGTTAACTGTTGCAGAAGTTTATGCTACAAAACTGGAACCAAACCAAGATGAATTGGCTTCACAG_-_ATGCCATGTGCAGAAAGCAAGTCTACAGAAGAAGATGAGCAGTTGAAAATGGCAACAGAATTGGATATTTTGGACAATTATATTAAGAAACTTAATCCAGGACGACAAGATGCTCAAAAGGATGATATCCCGGAGAATAATAGAAGTGACAAAACTAGAAATAGTTTAACAGCCAATGAAGCTGAATCAGCTAGAGACTTTTTTAGTAGTGTGAACAAGATAATAAAGGACTTAAACTTAGGATCTGAGGTGGTTGATGAATGGATAAAGGATTTAGATTCTGAAGTGAATTCTAAGTTGGCTGAAGACAACAAAGATGTACCTGATGGGCTTGTTTCTTCAACTGATGTATCCTACAACTCTTATTTAATAAATACTTTGGCTGCAATAAACATTGCAGTTTTCCTCTTCGAGCTTGCGAGTCCAGTGAAAAGTACAGATGCTGCGATTCTTTCCTTGCCTCTACTTTGTGGAGCAAAGATAAATGAGTTGATTTTGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGGGCAATTCTCACATTCGGACCTCTGGTTGATAGAGCTTATGGATCGTTTGCATTTTGCATGATATACTTTCTTGGAGGAGTTTGTGGCAACTTAATGAGCTTCTTCCATACCCCGGATGCTACTGTAGGTGGGACGGGTCCAGTCGTTGCCATCATTGGTTCTTGGATTATATATTTATTTCAGAACCGGGAGGCACTTGGAGAAGAAATGGTAGATAGTTTGATTCAGAAAGTAGCTGTTGCTAGTGTACTAAGTGTTGCGTTGAGTTACTTGACCCCTATTGATGACTACACACATTTGGGAGCAGCATGTGCAGGTCTCATATTTGGGATTCTCATTTGCCCTGTTGTGCCAGTACATT

Fln Alignment:

Contig8297___IIKDLNLGSEVVDEWIKDLDSEVNSKLAEDNKDVPDGLVSSTDVSYNSYLINTLAAINIAVFLFELASPVKSTDAAILSLPLLCGAKINELILNGEWxxxxxxxxxxxxxxxxxxxCF*SWAILTFGPLVDRAYGSFAFCMIYFLGGVCGNLMSFFHTPDATVGGTGPVVAIIGSWIIYLFQNREALGEEMVDSLIQKXXXXXXXXXXXXXLTPIDDYTHLGAACAGLIFGILICPVVPVH
A9NX52_________________MIKDLDLGSEVVDEWIKDLESEVTSKLAEDNKDILDGPVSSTDVSYNSYLINTLAAINIAVFLFELASPVKSSDAGILSLPLLFGAKINELILNGEWxxxxxxxxxxxxxxxxxxx-FSSWALLTFGPLVDTAYGSFAFCMIYFLGGVCGNLMSFFHTPDATVGGTGPVLAIIGSWIIYLFQNREALGEEMADNLIQKVAVASVLSVALSYLTPIDDWTHLGAACAGLIFGVFICPVVPVH

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
124	33	66			0.997452
125	66			33	0.997452
127		66		33	0.997452
771	14	85			0.993533
773	85		14		0.993533
782	12			87	0.992554
783	12			87	0.992554
1045			85	14	0.993533
1066	33	66			0.997452
1067		33		66	0.997452
1069	66			33	0.997452
1070			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain