SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8267

Length: 381 nt

UniGene Fasta

>biog3_v1.0_unigene8267
AATGTAATGTCCTCAACAGTGCCAAAGGGAATCCCAAAGGAGACAGTGGTCATGGCCATGTTTTGGGATCTGGTGGTGGTAACTATGGGCATGGAAGCATAATGAAAGGGAATAGCAAACCGGAGTCTGTTGCGACTGGCAACATCCAGTTCGCTGGAGAGGGCATGCTGCTGAAGCGGGCTATGTCCAGTACAGATCCAGAGGATGTGAAGAATGCAGCGAATGATCAATACAAAAAGGGCCATTTTGCAGAAGCATTGGCTCTGTATGATAGGGCTATTTCGCTGTCTCCCGGAAGTGCACCTTATAGAAGTAACAGGGCTGCTGCACTCACTGGGCTTGGACGATTTGCAGAGGCAGTGTCAGAATGCCAAGACGCAA

Ace file of the UniGene biog3_v1.0_unigene8267

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8434	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Small glutamine-rich tetratricopeptide repeat-containing protein A, putative n=1 Tax=Ricinus communis RepID=B9SE65_RICCO	-	-	56%
FL-Next	sp=TPR repeat-containing thioredoxin TTL1; Arabidopsis thaliana (Mouse-ear cress).	-	-	50%
Blast2go	tpr repeat-containing thioredoxin ttl1-like	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	0.0	71%
Blast2go	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3		IPR012335	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR015609	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9MAH1

Fln msg: Distance to subject end: 412 aas, your sequence is shorter than subject: 126 - 699

Fln protein: CNVLNSAKGNPKGDSGHGHVLGSGGGNYGHGSIMKGNSKPESVATGNIQFAGEGMLLKRAMSSTDPEDVKNAANDQYKKGHFAEALALYDRAISLSPGSAPYRSNRAAALTGLGRFAEAVSECQDA

Protein Length: 127

Fln nts: AATGTAATGTCCTCAACAGTGCCAAAGGGAATCCCAAAGGAGACAGTGGTCATGGCCATGTTTTGGGATCTGGTGGTGGTAACTATGGGCATGGAAGCATAATGAAAGGGAATAGCAAACCGGAGTCTGTTGCGACTGGCAACATCCAGTTCGCTGGAGAGGGCATGCTGCTGAAGCGGGCTATGTCCAGTACAGATCCAGAGGATGTGAAGAATGCAGCGAATGATCAATACAAAAAGGGCCATTTTGCAGAAGCATTGGCTCTGTATGATAGGGCTATTTCGCTGTCTCCCGGAAGTGCACCTTATAGAAGTAACAGGGCTGCTGCACTCACTGGGCTTGGACGATTTGCAGAGGCAGTGTCAGAATGCCAAGACGCAA

Fln Alignment:

Contig8267___GNSKPESVATGNIQFA----GEGMLLKRAMSSTDPEDVKNAANDQYKKGHFAEALALYDRAISLSPGSAPYRSNRAAALTGLGRFAEAVSECQDA
Q9MAH1_________________GSNSPVNVGSSSRSSSTVATGETPIWKKAILGSDSEEVKRVGNEMYRKGLFNEALKLYDRAIALSPTNAAYRSNRAAALIGLSRIGEAVKECEDA

SNPs (tot: 5)

Position	A %	G %	T %	Probability
40	66		33	0.997452
241		75	25	0.996473
243		75	25	0.996473
289	25		75	0.996473
290		75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain