SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8240

Length: 1589 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene8240

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2815	41/45
SustainPine v2.0	sp_v2.0_unigene25696	4/45

Source	Descriptions	Term	Type	Identity
AutoFact	Putative ERD6-like transporter (Fragment) n=2 Tax=Vitis vinifera RepID=D7T6L7_VITVI	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	erd6-like transporter	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	66%
Blast2go	carbohydrate transmembrane transporter activity	GO:0015144	Molecular Function	66%
Blast2go	integral to membrane	GO:0016021	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8F2

Fln msg:

Fln protein: MTIKLDLEQGELSEQADISQPFLTAEENTESKKSFSDRRSNEGSTATVFLSTFTVVLGSLEFGYCVGFSSPVQSAMIKDLGLTTSQFSTFSSLLTIGAMVGAILSGRTADFLGRKGALRVSSACYVVGWLMISLLKNAWLLYIGRLLTGYGAGLTSYTVPVYIAEITPKNLRGGLTTTNQLSITIGILIAYLLGMLVEWRLLAIIGIIPCILLVSGLFFIPESPRWLAKVGHDKEFEEALQALRGKDCDVSDEAAEIREYVEELGNLPRAKILDLFRLKYMHSVVVGVGLMVFQQFGGINAVMFYASEIFKDAGFSSSNMASVAVAALQVPMTAIGALLMDKSGRRPLLMVSAGGMSIGCSLVGVSFYLQNHESDTHLSLVVTILALGGLLGYIAAFSLGMGGIPWIIMSEIFPINMKGIAGSLVTLVCWFGSWVITVTFNFLLAWSTEGTFFLFAGISASAVFFVAYLVPETKGQTLEEIQSSFESFLQEER*

Protein Length: 495

Fln nts: AATGTTAATTTAATAGGATGTCATAAAGCTTGGCAAGTGTTTCATAGGCCTTATTAAAGTGCC_-_ATGACGATCAAGCTAGATCTGGAGCAGGGAGAACTGAGTGAGCAGGCAGATATCAGCCAGCCATTTCTGACAGCTGAAGAGAATACTGAAAGCAAGAAAAGTTTCAGCGACAGGAGAAGCAATGAAGGTTCGACTGCAACAGTGTTCCTCAGCACTTTCACTGTGGTGCTGGGCTCTCTGGAGTTTGGATACTGTGTGGGATTCTCTTCTCCTGTTCAGTCTGCCATGATCAAGGACCTCGGCCTGACTACGTCTCAGTTTTCTACCTTTAGTTCGCTACTGACTATAGGTGCAATGGTTGGTGCAATACTGAGTGGCCGCACTGCAGATTTCTTGGGCCGGAAAGGAGCGTTAAGAGTGTCATCAGCCTGTTATGTGGTTGGATGGCTAATGATATCCCTCTTAAAGAATGCATGGCTACTATACATTGGAAGACTGCTTACAGGATATGGAGCTGGTCTTACTTCCTATACGGTTCCTGTATACATAGCTGAAATAACTCCCAAGAACTTAAGGGGAGGGCTTACAACAACAAATCAATTGTCCATAACCATCGGTATTTTAATAGCATATTTGCTTGGGATGCTAGTCGAATGGCGCCTTCTTGCTATTATAGGAATCATCCCCTGTATTCTTTTGGTATCAGGACTCTTCTTTATTCCAGAGTCCCCTAGGTGGTTGGCAAAAGTTGGCCATGACAAAGAATTTGAAGAAGCATTGCAAGCCCTTCGTGGAAAGGACTGTGATGTTTCTGATGAAGCAGCTGAAATAAGGGAATATGTAGAGGAGCTGGGAAACCTTCCTAGGGCCAAAATATTGGACTTGTTTCGGTTGAAGTATATGCATTCTGTGGTTGTTGGAGTTGGCTTGATGGTATTCCAACAATTTGGAGGAATCAATGCTGTTATGTTCTATGCCAGTGAAATTTTTAAAGATGCTGGCTTTTCTTCCAGCAACATGGCATCAGTGGCTGTGGCTGCCCTACAGGTGCCAATGACAGCAATAGGTGCACTGTTAATGGACAAATCCGGACGGCGACCTCTTTTAATGGTCTCCGCTGGAGGAATGAGCATAGGGTGCTCCCTAGTTGGAGTGTCATTCTATTTACAGAATCACGAAAGTGATACTCATCTTTCGCTCGTGGTGACCATATTGGCTCTAGGTGGTCTCTTGGGCTATATTGCAGCATTCTCTTTGGGCATGGGTGGAATTCCATGGATTATAATGTCTGAGATATTTCCTATAAATATGAAAGGCATTGCTGGCAGTTTGGTGACACTTGTTTGTTGGTTTGGGTCTTGGGTTATCACAGTCACCTTCAATTTTCTTCTTGCATGGAGTACAGAAGGTACATTCTTTCTCTTCGCTGGGATAAGTGCATCTGCAGTGTTTTTTGTTGCATATCTCGTGCCAGAGACCAAGGGGCAAACTCTGGAAGAAATACAATCATCATTTGAATCATTTTTACAAGAAGAACGTTGA___ACGCCAACTAAGTGTTTATTAAAAATCTGTATTCTGTCTACATT

Fln Alignment:

Contig8240___MTIKLDLEQGELSEQADISQPFLTAEENTESKKSFSDRRSNEGSTATVFLSTFTVVLGSLEFGYCVGFSSPVQSAMIKDXXXXXXXXXXXXXXXXIGAMVGAILSGRTADFLGRKGALRVSSACYVVGWLMISLLKNAWLLYIGRLLTGYGAGLTSYTVPVYIAEITPKNLRGGLTTTNQLSITIGILIAYLLGMLVEWRLLAIIGIIPCILLVSGLFFIPESPRWLAKVGHDKEFEEALQALRGKDCDVSDEAAEIREYVEELGNLPRAKILDLFRLKYMHSVVVGVGLMVFQQFGGINAVMFYASEIFKDAGFXXXXXXXXXXXXLQVPMTAIGALLMDKSGRRPLLMVSAGGMSIGCSLVGVSFYLQNHESDTHLSLVVTXXXXXXXXXXXXXFSLGMGGIPWIIMSEIFPINMKGIAGSLVTLVCWFGSWVITVTFNFLLAWSTEGTFFLFAGISASAVFFVAYLVPETKGQTLEEIQSSFESF
D5A8F2_________________MTIKIDLEIGELSEQADISQPFLPAEEKTESKKSFSERRSNGGSIATVVLSTFVVVLGSLEFGYSVGFSSPVQSAMMEDLGLTMSQYSTFGSLLTIGAMVGAILSGRIADFLGRKGALRVSSASYVIGWLIISLLKDAWLLDIGRLFIGYGVGLTSYTIPVYIAEITPKNLRGGLTTTNQLSITIGILIAYLLGMLVRWRLLAIIGIIPCFLLVLGLFFIPESPRWLAKVGHDKEFDEALQALLGKDCDVSVEAAEIREYVEELENLPRAKILDLFRPKYMHSVIVGVGLMVFQQLGGINAVMFYASEIFKDAGIASNHAASVAVAALQVPMTAFGALLMDRSGRRPLLMVSAGGMSLGCFLVGLSFYIQGHANDTHLAALVTILALGGLLGYIATFSLGMGGIPWIIMSEIFPINMKGIAGSLVTLVAWFGSWVITVTFNYLLAWSAAGSFFIFAGVSASAVVFVAYLLPETKGQTLEEIQSSFESF

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1475	25	75			0.996473
1478			75	25	0.996473
1479	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain