SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8204

Length: 400 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene8204
AATGTAAAAAGGAAGAGATAATGTTGGGTCACTGAATTCAGCAGCCTCAAAAGAAATTCACTCATTGAACAATGTAATAAAGTGCATTGAAGTGCACAAACTTGAATCACAGATGCCTACCAAAGATCTTCAAAATCGTGTGGCTCAGTTACAGAAAGACATGGAAGAGAGGAAAAGATCTGCAGAAGCTATTAGGACTGAGACTAAACGGGCTCGGCTTAACAGTGATAATGGTGGAGGTGGTGCTGTTGCTGGTTCCTTGTTCCCTAAAACTACCCCTTCCAGTGCCTTTGCCCTTCCCAATTCTTCTTCGCTGCTCCCTAAAACTACCCCTCCTAGTACCTTTGCGCTTTCCAATTCTTCTTCTCTGCTCCCTACTAAACCTACCCATCCCAGTGCC

Ace file of the UniGene biog3_v1.0_unigene8204 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12346	6/7
SustainPine v2.0	sp_v2.0_unigene28882	1/7

Source	Descriptions	Term	Type	Identity
AutoFact	ABI3-interacting protein 2 n=1 Tax=Callitropsis nootkatensis RepID=Q84NF6_9CONI	-	-	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	abi3-interacting protein 2	-	-	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	Tektin	IPR000435	-	0.0	-
Sma3	Frigida-like	IPR012474	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWA8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 108 aas, your sequence is shorter than subject: 133 - 611

Fln protein: M*KGRDNVGSLNSAASKEIHSLNNVIKCIEVHKLESQMPTKDLQNRVAQLQKDMEERKRSAEAIRTETKRARLNSDNGGGGAVAGSLFPKTTPSSAFALPNSSSLLPKTTPPSTFALSNSSSLLPTKPTHPSA

Protein Length: 134

Fln nts: AATGTAAAAAGGAAGAGATAATGTTGGGTCACTGAATTCAGCAGCCTCAAAAGAAATTCACTCATTGAACAATGTAATAAAGTGCATTGAAGTGCACAAACTTGAATCACAGATGCCTACCAAAGATCTTCAAAATCGTGTGGCTCAGTTACAGAAAGACATGGAAGAGAGGAAAAGATCTGCAGAAGCTATTAGGACTGAGACTAAACGGGCTCGGCTTAACAGTGATAATGGTGGAGGTGGTGCTGTTGCTGGTTCCTTGTTCCCTAAAACTACCCCTTCCAGTGCCTTTGCCCTTCCCAATTCTTCTTCGCTGCTCCCTAAAACTACCCCTCCTAGTACCTTTGCGCTTTCCAATTCTTCTTCTCTGCTCCCTACTAAACCTACCCATCCCAGTGCC

Fln Alignment:

Contig8204___GSLNSAASKEIHSLNNVIKCIEVHKLESQMPTKDLQNRVAQLQKDMEERKRSAEAIRTETKRARLNSDNGG-GGAVAGSLFPKTTPSSAFAXXXXXXXXXXXXXXXTFALSNSSSLLPTKPTHPSA
A9NWA8_________________GAQIAAASKEIASLNSVIKLIEEHKLESQMSSKDLEKRVAQLEKVKAERKRFMEDTSSQPKRPRLSSGAGADSGAGAGSLVPKPSPPSAFALSNSSALLSKPTPPSAFALSNSSALL-SKPTPPSA

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
189	20	80			0.995493
190	20	80			0.995493
191		80		20	0.995493
211	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain