SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8187

Length: 2221 nt

UniGene Fasta

>biog3_v1.0_unigene8187
GACTCTGCCCGTAGCTTAAGTGGTGCTGCAGTTGATGAGCTTGTCACTCTCAGTGTGATGGAGTCATTAGGAGTAAGTACTGGTTCGATGGCAGGAGCAGCTATTTTGAGAGTTCTACAAGCATTGAGTACGTTAACATCAGATACTGGTGCTGGGGCCACTGATGACAAGGAAAATGAAAGTCTTTTGATTGTTGGGGAACTAAATGCAGCACTTGATCCATTATGGCAAGGATTGAGTAGTTGTATAAGTGAAATTGAGCTGCGATTGGGAAATATTTCTGATTTCTCTTCTGCATCAAGTAGGAATGCAGCAGCGACTAACATGGCACCACCTCTTCCACCTGGTACCCAAAGGGTTTTGCCATTTATTGAGGCATTTTTTGTTTTATGTGAGAAGTTGCAGCTAGGACCCACTGCTGTGCAACATGATCCTGATGATGCCAGTGTGAGTGATGTTACACAACAAAGAAGAGCAGAGGCAGGTATGACATTTGTAAAGTTTGCGGAAAAACATCGACGGCTTCTGAATGCTTTTGTCCGGCAGAATCCGGGGTTATTAGAGAAGTCTCTTTCTCTTATGCACAAGACACCTCGTCTAATTGACTTTGACAACAAGCGATCATTTTTCCGCTCTCGGATTAGACAACAGAATGAGCAGCACAACTATAATCCACTCCGTATTTGTGTTCGCCGAACATATGTCTTAGAAGATTCTTACAATCAATTACGGATGCGTTCTGTAGATGACATTAAAGGGCGCTTGACTGTGCAATTTCAAGGAGAGGAGGGCATTGATGCTGGTGGTTTAACAAGAGAATGGTACCAACTATTGTCCAGGGTGATATTTGACAAGGGTGCATTGCTATTCACAACTGTCGGGAATCAGTCAACATTTCAGCCTAATCCAAATTCTGTTCTTCAAACAGAACACCTCTCATACTTCAAGTTTGTTGGGCGGGTGGTTGCTAAAGCATTATTTGATGGTCAACTACTGGATGTCTATTTTACCCGATCTTTTTACAAACACATACTTGGAGCAAAAGTTACATACCATGATATTGAGGCTGTTGATCCAGATTACTATAAGAATCTGAAATGGATGCTTGAGAATGATGTAAGTGACATCCTTGATCTCACTTTCAGTAGAGATGCAGATGAGGAAAAGCACATCCTGTACGAGAAGACTGAGGTAACCGACTATGAGCTTATCCCTGGTGGAAGAAATATCCGTGTCACAGAAGAAAACAAGCACGAATATGTGGATCTTGTTGCAGAGCATACGCTGACCACAGCCATTCGCCCTCAAATAAATGCTTTCCTGGAAGGATTCAATGAGTTGATACCAAGGCATCTTATCTCAATATTCAATGACAAAGAACTTGAACTCTTGATTAGTGGACTACCTGAAATTGACCTTGATGATCTGAAGGCCAGTACAGAGTACACAGGATACACTGCAGCATCTCCTTTAATACAGTGGTTTTGGGAGGTTGTGCAAGGATTTAGCAAGGAGGACATGGCACGATTGTTGCAGTTTGTCACAGGAACATCAAAGGTTCCATTAGAAGGGTTTAAAGCTCTTCAAGGTATATCTGGTCCTCAAAGATTTCAAATTCACAAAGCATATGGAGCTCCAGAGCGTCTGCCATCAGCTCATACCTGTTTCAATCAGTTAGACCTTCCTGATTATTCTTCAAAGGAACAGCTTAAGGAACGATTGTTGTTGGCCATTCATGAAGCTAGTGAAGGCTTTGGCTTTGGTTGATTTTTTGAAACAACAATTTTATCACACTAATGTTTCTTGCAAATATAGCTGCAGGACACTGCCAAATATCCTTCTGTATTGATTTGGAATCTGCCATATAGTTTCAAGCCAATCTCTGAGGGCTAATACGAAAGTCTATACTGTTGATCTGTACAAATCTATATTTTGCATGTGGAAATCAATTTTCTTGTTCTGGTAATGCTTTAAGCAATTGCTGTGATTATTGATATTGTTGGGAATAGCCCCTACAAGCGAATTAAGGGGTCAAGCTGTATTATTGATTTTGCCTCTTATTCGGTGTTATATGGTCACACCCTGATTAATGTCTAGGACGTGTACAATAAGATAGAATCTGAAAGTTTGGTCAGACTGCTGGATATGTAACTACAAGCAAACCAATTTTATCATCATTTGTTGGGAATTTAATGGAGGTGACCATCAATTGAAGGTTGTT

Ace file of the UniGene biog3_v1.0_unigene8187

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11041	56/56

Source	Descriptions	Term	Type	Identity
AutoFact	putative ubiquitin-protein ligase 1 [Oryza sativa Japonica Group]	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	ubiquitin-protein ligase 1	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	88%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	88%
Blast2go	binding	GO:0005488	Molecular Function	88%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	88%
Blast2go	membrane	GO:0016020	Cellular Component	88%
Blast2go	cytosol	GO:0005829	Cellular Component	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	88%
Blast2go	ubiquitin ligase complex	GO:0000151	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	HECT	IPR000569	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	E3 ubiquitin ligase, domain of unknown function DUF908	IPR010309	-	-
Sma3	E3 ubiquitin ligase, domain of unknown function DUF913	IPR010314	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKQ9

Fln msg: your sequence is shorter than subject: 589 - 1032

Fln protein: DSARSLSGAAVDELVTLSVMESLGVSTGSMAGAAILRVLQALSTLTSDTGAGATDDKENESLLIVGELNAALDPLWQGLSSCISEIELRLGNISDFSSASSRNAAATNMAPPLPPGTQRVLPFIEAFFVLCEKLQLGPTAVQHDPDDASVSDVTQQRRAEAGMTFVKFAEKHRRLLNAFVRQNPGLLEKSLSLMHKTPRLIDFDNKRSFFRSRIRQQNEQHNYNPLRICVRRTYVLEDSYNQLRMRSVDDIKGRLTVQFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNQSTFQPNPNSVLQTEHLSYFKFVGRVVAKALFDGQLLDVYFTRSFYKHILGAKVTYHDIEAVDPDYYKNLKWMLENDVSDILDLTFSRDADEEKHILYEKTEVTDYELIPGGRNIRVTEENKHEYVDLVAEHTLTTAIRPQINAFLEGFNELIPRHLISIFNDKELELLISGLPEIDLDDLKASTEYTGYTAASPLIQWFWEVVQGFSKEDMARLLQFVTGTSKVPLEGFKALQGISGPQRFQIHKAYGAPERLPSAHTCFNQLDLPDYSSKEQLKERLLLAIHEASEGFGFG*

Protein Length: 590

Fln nts: GACTCTGCCCGTAGCTTAAGTGGTGCTGCAGTTGATGAGCTTGTCACTCTCAGTGTGATGGAGTCATTAGGAGTAAGTACTGGTTCGATGGCAGGAGCAGCTATTTTGAGAGTTCTACAAGCATTGAGTACGTTAACATCAGATACTGGTGCTGGGGCCACTGATGACAAGGAAAATGAAAGTCTTTTGATTGTTGGGGAACTAAATGCAGCACTTGATCCATTATGGCAAGGATTGAGTAGTTGTATAAGTGAAATTGAGCTGCGATTGGGAAATATTTCTGATTTCTCTTCTGCATCAAGTAGGAATGCAGCAGCGACTAACATGGCACCACCTCTTCCACCTGGTACCCAAAGGGTTTTGCCATTTATTGAGGCATTTTTTGTTTTATGTGAGAAGTTGCAGCTAGGACCCACTGCTGTGCAACATGATCCTGATGATGCCAGTGTGAGTGATGTTACACAACAAAGAAGAGCAGAGGCAGGTATGACATTTGTAAAGTTTGCGGAAAAACATCGACGGCTTCTGAATGCTTTTGTCCGGCAGAATCCGGGGTTATTAGAGAAGTCTCTTTCTCTTATGCACAAGACACCTCGTCTAATTGACTTTGACAACAAGCGATCATTTTTCCGCTCTCGGATTAGACAACAGAATGAGCAGCACAACTATAATCCACTCCGTATTTGTGTTCGCCGAACATATGTCTTAGAAGATTCTTACAATCAATTACGGATGCGTTCTGTAGATGACATTAAAGGGCGCTTGACTGTGCAATTTCAAGGAGAGGAGGGCATTGATGCTGGTGGTTTAACAAGAGAATGGTACCAACTATTGTCCAGGGTGATATTTGACAAGGGTGCATTGCTATTCACAACTGTCGGGAATCAGTCAACATTTCAGCCTAATCCAAATTCTGTTCTTCAAACAGAACACCTCTCATACTTCAAGTTTGTTGGGCGGGTGGTTGCTAAAGCATTATTTGATGGTCAACTACTGGATGTCTATTTTACCCGATCTTTTTACAAACACATACTTGGAGCAAAAGTTACATACCATGATATTGAGGCTGTTGATCCAGATTACTATAAGAATCTGAAATGGATGCTTGAGAATGATGTAAGTGACATCCTTGATCTCACTTTCAGTAGAGATGCAGATGAGGAAAAGCACATCCTGTACGAGAAGACTGAGGTAACCGACTATGAGCTTATCCCTGGTGGAAGAAATATCCGTGTCACAGAAGAAAACAAGCACGAATATGTGGATCTTGTTGCAGAGCATACGCTGACCACAGCCATTCGCCCTCAAATAAATGCTTTCCTGGAAGGATTCAATGAGTTGATACCAAGGCATCTTATCTCAATATTCAATGACAAAGAACTTGAACTCTTGATTAGTGGACTACCTGAAATTGACCTTGATGATCTGAAGGCCAGTACAGAGTACACAGGATACACTGCAGCATCTCCTTTAATACAGTGGTTTTGGGAGGTTGTGCAAGGATTTAGCAAGGAGGACATGGCACGATTGTTGCAGTTTGTCACAGGAACATCAAAGGTTCCATTAGAAGGGTTTAAAGCTCTTCAAGGTATATCTGGTCCTCAAAGATTTCAAATTCACAAAGCATATGGAGCTCCAGAGCGTCTGCCATCAGCTCATACCTGTTTCAATCAGTTAGACCTTCCTGATTATTCTTCAAAGGAACAGCTTAAGGAACGATTGTTGTTGGCCATTCATGAAGCTAGTGAAGGCTTTGGCTTTGGTTGA___TTTTTTGAAACAACAATTTTATCACACTAATGTTTCTTGCAAATATAGCTGCAGGACACTGCCAAATATCCTTCTGTATTGATTTGGAATCTGCCATATAGTTTCAAGCCAATCTCTGAGGGCTAATACGAAAGTCTATACTGTTGATCTGTACAAATCTATATTTTGCATGTGGAAATCAATTTTCTTGTTCTGGTAATGCTTTAAGCAATTGCTGTGATTATTGATATTGTTGGGAATAGCCCCTACAAGCGAATTAAGGGGTCAAGCTGTATTATTGATTTTGCCTCTTATTCGGTGTTATATGGTCACACCCTGATTAATGTCTAGGACGTGTACAATAAGATAGAATCTGAAAGTTTGGTCAGACTGCTGGATATGTAACTACAAGCAAACCAATTTTATCATCATTTGTTGGGAATTTAATGGAGGTGACCATCAATTGAAGGTTGTT

Fln Alignment:

Contig8187___LMHKTPRLIDFDNKRSFFRSRI---RQQNEQHN-YNPLRICVRRTYVLEDSYNQLRMRSVDDIKGRLTVQFQGE-----EGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNQSTFQPNPNS-VLQTEHLSYFKFVGRVVAKALFDGQLLDVYFTRSFYKHILGAKVTYHDIEAVDPDYYKNLKWM--LENDVSDILDLTFSRDADEEKHILYEKTEVTDYELIPGGRNIRVTEENKHEYVDLVAEHTLTTAIRPQINAFLEGFNELIPRHLISIFNDKELELLISGLPE-IDLDDLKASTEYT-GYTAASPLIQWFWEVVQGFSKEDMARLLQFVTGTSKVPLEGFKALQGISGPQRFQIHKAYGAPE----RLPSAHTCFNQLDLPDYSSKEQLKERLLLAI
B8LKQ9_________________LLKRAPFLVPFTNRVQIYTSQLAAARQQNSFHTPFVRHRIRIRRNRAVEDAFSELNGLTGEELRGMIRVIFVNEFGVEEPGVDGGGIFKDFMENITKTAFDIQYGLFKETADHLLY-PNPASGTIHPEHLQYFEFLGKILGKAMFEGILVDIPFATFFLSKLKEKHNYLHDLPSLDPELYRSLLSLKHYDGDVSE-LGLYFVSENN-------EYGEQKEEEMLPGGKDMQVTNENVIKFIHLMANHHLNSQIRNQSSYFLRGFQQLIQSDWLNMFNEHELQLLISGSTEGMDVDGLRSNVHYAGGYSEDHPVIEMFWEVIKQFSLEQQKKFLKFVTGCSRGPLLGFKYLE---PPFCIQRAAPEDAPEEVLDRLPTSATCVNLLKLPPYRSKDVLRSKLLYAI

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
236	20			80	0.995493
259	80	20			0.995493
797		14	85		0.993533
883	11			88	0.923564
884		11	88		0.923564
886		88		11	0.923564
910	14			85	0.993533
911	85	14			0.993533
914	16	66		16	0.988813
917	80			20	0.995493
918	80			20	0.995493
989	20		80		0.995493
1026	20			80	0.995493
1110		11		88	0.923564
1111	11		88		0.923564
1112			88	11	0.923564
1113	88			11	0.923564
1140	12	87			0.992554
1191	10		90		0.90298
1192	90			10	0.90298
1193			90	10	0.90298
1236	88	11			0.923564
1239	88			11	0.923564
1287	11		88		0.923564
1288	88			11	0.923564
1290		88		11	0.923564
1339	14		85		0.993533
1470	11		88		0.923564
1473			88	11	0.923564
1474		88		11	0.923564
1532			80	20	0.995493
1544	25		75		0.996473
1547			75	25	0.996473
1608	33		66		0.997452
1609		33	66		0.997452
1611		66		33	0.997452
1800	75			25	0.996473
1806	20	80			0.995493
1809	80		20		0.995493
1870		83	16		0.994512
2066	12	87			0.992554
2069	12	87			0.992554
2173	83	16			0.994512
2175		83		16	0.994512
2176		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain