SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8174

Length: 1306 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene8174 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4818	17/18

Source	Descriptions	Term	Type	Identity
AutoFact	neutral invertase-like protein [Arabidopsis thaliana] ref\|NP_001031790.1\| neutral invertase-like protein [Arabidopsis thaliana] emb\|CAB45447.1\| invertase-like protein [Arabidopsis thaliana] emb\|CAB80203.1\| invertase-like protein [Arabidopsis thaliana] gb\|	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	76%
Blast2go	protein	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-fructofuranosidase.	EC:3.2.1.26	-	0.0	89%

Source	KEGGs	Term	Type	Identity
Blast2go	Galactose metabolism	00052		89%
Blast2go	Starch and sucrose metabolism	00500		89%
Blast2go	Metabolic pathways	01100		89%
Blast2go	Sucrose alpha-glucosidase.	EC:3.2.1.48	-	89%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	89%
Blast2go	Metabolic pathways	01100		0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	89%
Blast2go	sucrose alpha-glucosidase activity	GO:0004575	Molecular Function	89%
Blast2go	binding	GO:0005488	Molecular Function	89%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR006937	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: D8S8U3

Fln msg: Overlapping hits, possible frame ERROR between 50 and 44, STOP codon was not found. Distance to subject end: 16 aas, your sequence is shorter than subject: 435 - 488

Fln protein: FGILMNGEPEIVKxxxxKTLRLQAWWEKRVDCFTLGEGVMPASFKVLHDPVRNSDTMIADFGESAIGRVAPVDSGFWWIILLRVYTKSTGDHSLADMPDCQRGMRLILTLCLSEGFDTFPTLLCADGCCMVDRRMGIYGYPIEIQALFFMALRCARILLKPEGGGKEFIERIDKRLHALSYHMRNYFWLDFEQLNNIYRYKTEEYSHTAVNKFNVIPDSITDWVFDFMPIRGGYFIGNVSPARMDFRWFCLGNCIAILSSLATPEQSTRIMDLIEERWEDLVGENASQGFIPCLRGS*MANSNRLRSKEHKMELPQWRILASAFVAIHCSLY*NGKAANGQKGH*TC*DQTI*GWLA*IL*WEAWTIYWKAVSKVANLVSCWISCSQDDA*RSIPFRYDSIGRGQEDEAVPHSISFLDNVKWGNPKLSTSTHSIS

Protein Length: 436

Fln nts: GCTTTGGCATTCTGATGAATGGCGAACCTGAGATCGTCAAGxxxxxxxxxxxxAAGACACTCCGACTTCAAGCATGGTGGGAGAAACGAGTGGATTGTTTCACATTAGGAGAAGGAGTTATGCCTGCCAGTTTTAAAGTACTCCATGATCCTGTTCGTAACAGTGATACAATGATTGCAGATTTTGGAGAAAGTGCCATAGGCAGAGTTGCTCCCGTAGATTCTGGATTTTGGTGGATTATTCTGTTGCGTGTCTATACAAAGTCTACTGGAGATCATTCTTTAGCAGACATGCCTGACTGCCAGCGTGGAATGAGGCTTATTTTGACATTGTGCCTCTCTGAAGGCTTCGACACTTTTCCCACTCTCCTCTGTGCAGATGGATGCTGTATGGTTGATCGCAGAATGGGCATTTATGGTTATCCCATTGAAATTCAAGCCTTGTTCTTCATGGCACTAAGGTGTGCCCGGATACTCCTTAAACCAGAAGGTGGGGGAAAAGAGTTCATAGAGCGAATTGATAAAAGGCTGCATGCATTAAGTTATCACATGCGTAACTATTTCTGGTTAGACTTTGAGCAGTTGAACAACATATATCGATACAAGACTGAGGAATATTCTCACACTGCTGTAAATAAATTCAATGTTATTCCTGATTCCATTACAGATTGGGTATTTGATTTCATGCCAATTAGAGGAGGTTATTTTATTGGAAATGTCAGCCCAGCTCGGATGGACTTTAGGTGGTTTTGTTTGGGTAATTGTATTGCAATTTTGTCATCCTTGGCAACACCTGAACAGTCTACAAGAATAATGGATCTTATTGAAGAGCGGTGGGAAGATCTGGTTGGAGAGAATGCCTCTCAAGGTTTCATACCCTGCCTTAGAGGGTCATGAATGGCGAATAGTAACAGGTTGCGATCCAAAGAACACAAGATGGAGTTACCACAATGGAGGATCTTGGCCAGTGCTTTTGTGGCTATTCACTGCAGCCTGTATTAAAACGGGAAGGCCGCAAATGGCCAGAAGGGCCATTGAACTTGCTGAGACCAGACTATCTAAGGATGGCTGGCCTGAATATTATGATGGGAAGCTTGGACGATATATTGGAAAGCAGTCTCGAAAGTGGCAAACCTGGTCAGTTGCTGGATATCTTGTAGCCAAGATGATGCTTGAAGATCCATCCCATTTAGGTATGATAGCATTGGAAGAGGACAAGAAGATGAAGCCGTCCCTCACTCGATCAGCTTCTTGGATAATGTAAAATGGGGAAATCCTAAACTTTCAACATCCACTCACTCGATCAGC

Fln Alignment:

Contig8174___LMNGEPEIVKHxxLKTLRLQAWWEKRVDCFTLGEGVMPASFKVLHDPVRNSDTMIADFGESAIGRVAPVDSGFWWIILLRVYTKSTGDHSLADMPDCQRGMRLILTLCLSEGFDTFPTLLCADGCCMVDRRMGIYGYPIEIQALFFMALRCARILLKPEGGGKEFIERIDKRLHALSYHMRNYFWLDFEQLNNIYRYKTEEYSHTAVNKFNVIPDSITDWVFDFMPIRGGYFIGNVSPARMDFRWFCLGNCIAILSSLATPEQSTRIMDLIEERWEDLVGE
D8S8U3_________________LMNGEAEVVKNxxLKALRLQAW-EKRVDCFTLGEGVMPASFKVMQDPVRGTETMLADFGEAAIGRVAPVDSGFWWIILLRAYTKSTGDFTLAEMPDCQRGMRLILSLCLAEGFDTFPTLLCADGCCMIDRRMGIYGYPIEIQSLFFMALRCAKTLLKPELGGKEFIERIEKRLVALSYHIRTYFWLDFQNLNNIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPMKGGYFIGNVSPARMDFRWFLIGNCVAILSSIATPEQASAIMDLVEARWADLVGE

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
128	20		80		0.995493
132		80		20	0.995493
630	77		22		0.999999
748			80	20	0.995493
749	80			20	0.995493
874	20	80			0.995493
875	20			80	0.995493
878	80			20	0.995493
920		83		16	0.994512
1060	40		60		1.0
1063		60		40	1.0
1064			60	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain