SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8169

Length: 526 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene8169
TATTAGACGTGGGTGGTGTTTATGACTCCACAAAGGATTGGTATGATCACCATCAGAAAGGCTTTAATCAAGACTTTGGACATGGTTTCAGAACAAAGCTGAGTACTGCTGGCCTTGTGTACAAGCATTATGGAAGGGAAATAGTATCCAGGTATCTTGGTTTGGATGCAAACCATTCTGACGTTGAGCGAGTCTATCTTGCGCTATACAAAGGTTTCATGGAGGAAATTGATGCTGTAGATAATGGAATAAATCAGTATGACACTGAAAAACCAGCTAGATATGAGAGAAATACAAATTTGTCAGCAAGGATTTCTAGAATGAACCCTGACTGGATGGAGGAAAACACTGCTGATAAAGAGGACCACCTTTTCCATAATGCTATGAAGGTTGCAGGAAATGGATTTGAAGAGATGTTGTGTTATTATGCGAAATCTTGGTTGCCTGCACATTCATTTGTTTCTGACTGCATAAAAAGTTGAGGAATGAAGTTGATCCAAGTGGAGAGATATTACACTTGAAGAGA

Ace file of the UniGene biog3_v1.0_unigene8169 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1400	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	[S] COG4286 Uncharacterized conserved protein related to MYG1 family	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Metal-dependent protein hydrolase	IPR003226	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NN41

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 99 aas, your sequence is shorter than subject: 160 - 383

Fln protein: LDVGGVYDSTKDWYDHHQKGFNQDFGHGFRTKLSTAGLVYKHYGREIVSRYLGLDANHSDVERVYLALYKGFMEEIDAVDNGINQYDTEKPARYERNTNLSARISRMNPDWMEENTADKEDHLFHNAMKVAGNGFEEMLCYYAKSWLPAHSFVSDCIKS*

Protein Length: 161

Fln nts: TATTAGACGTGGGTGGTGTTTATGACTCCACAAAGGATTGGTATGATCACCATCAGAAAGGCTTTAATCAAGACTTTGGACATGGTTTCAGAACAAAGCTGAGTACTGCTGGCCTTGTGTACAAGCATTATGGAAGGGAAATAGTATCCAGGTATCTTGGTTTGGATGCAAACCATTCTGACGTTGAGCGAGTCTATCTTGCGCTATACAAAGGTTTCATGGAGGAAATTGATGCTGTAGATAATGGAATAAATCAGTATGACACTGAAAAACCAGCTAGATATGAGAGAAATACAAATTTGTCAGCAAGGATTTCTAGAATGAACCCTGACTGGATGGAGGAAAACACTGCTGATAAAGAGGACCACCTTTTCCATAATGCTATGAAGGTTGCAGGAAATGGATTTGAAGAGATGTTGTGTTATTATGCGAAATCTTGGTTGCCTGCACATTCATTTGTTTCTGACTGCATAAAAAGTTGAGGAATGAAGTTGATCCAAGTGGAGAGATATTACACTTGAAGAGA

Fln Alignment:

Contig8169___LDVGGVYDSTKDWYDHHQKGFNQDFGHGFRTKLSTAGLVYKHYGREIVSRYLGLDANHSDVERVYLALYKGFMEEIDAVDNGINQYDTEKPARYERNTNLSARISRMNPDWMEEN-TADKEDHLFHNAMKVAGNGFEEMLCYYAKSWLPAHSFVSDCI
A9NN41_________________LDVGGVYDPSKDRYDHHQRGFGAVFGHGFVTKLSSAGLIYKHFGLEIISREIGRDPGHPDVERMYLAVYKSFVEAIDAIDNGINMYDTDQPPKYINNTHLSSRVGKINIDWIDEDQSPEKENERFHHAMALAGGEFLESIHHHAKSWLPARSIVEESI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
284	16	83			0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain