SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8136

Length: 1705 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene8136 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5092	22/22

Source	Descriptions	Term	Type	Identity
AutoFact	Protein phosphtase 2C n=1 Tax=Marchantia polymorpha RepID=D3W6X9_MARPO	-	-	48%
FL-Next	sp=Probable protein phosphatase 2C 8; Oryza sativa subsp. japonica (Rice).	-	-	52%
Blast2go	protein phosphatase 2c	-	-	63%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q5SN75

Fln msg: your sequence is longer than subject: 454 - 403

Fln protein: MEGLEICRSPCSIAEKNPLPCEPKSRAARRRRMEIRKFKVIATSPIVKPTETSRKRLKIIILGRDFARDCVNAIESSMSGAGVELDPVTNDASTSGNEEKAGLSAFPLTSEAKLQETGSAGLKEKAADRTDGCSVGVDNICPEHAFVSVCGRRREMEDAVSILPAFNCTKNESNTKSDPALHFFGVYDGHGGSQAALFCKERLHEVLAEELRIFGGNAQDGTQWQQLTSACFGRVDAEILSGGIVCRNDCITREGNNECSCGQRITSEAVGTTAVVAIVGSSQIVVANCGDSRAILSRGGRPVVLSQDHKPDRPDEMERIEAAGGRVFFWNGPRVLGVLAMSRAIGDKYLKPYVIAKPEVTINARSDEDEFLILASDGLWDVLSNEVVCEVARRCLSGRSHRSYGGLQAEGRDDSPAAIAAALLTKLAIARGSQDNITVVVVDLQRRRRHQSR*

Protein Length: 455

Fln nts: GGTTATTGCGAGGCGTGGGTACTATTTAAAGGTCCTGGGTTCGACACCCTCGGGATGTTTGTGTACAGGTTTCTGATGTGCTGCGAGTCTGTACGTGAGGACAGGGAGACTGTAGGAGAGGGAGTAGATTTGTGCCTTTTGGCGTGACAGCGGTTGACAGGGATTTTTCATTTTGAGGCCGTTTTTGTTGAATTGGCAGTCTAGGGTTTGAAAGCGCAGTTTCTGAGCTTGAAGGGATTCTTCTTTGTTGTCTGCCGGGGAAGAACATTTTGTGGAGTCGTGTATATATTGAGGTTGTCTGGC_-_ATGGAAGGCTTAGAGATCTGCAGGAGCCCGTGTAGCATAGCGGAGAAGAATCCGCTGCCATGCGAGCCCAAGTCCCGCGCGGCAAGGCGAAGGCGCATGGAGATCCGGAAATTTAAGGTTATCGCAACGTCTCCCATCGTGAAGCCCACTGAAACGTCACGGAAAAGACTTAAAATTATCATTTTGGGCCGTGATTTTGCCAGGGACTGCGTGAACGCCATCGAGAGCTCAATGTCCGGGGCAGGAGTCGAGCTGGATCCAGTCACAAACGATGCCTCGACGTCTGGAAATGAGGAAAAGGCAGGTCTTTCGGCTTTTCCGTTAACGAGCGAAGCGAAGCTGCAGGAAACTGGATCGGCAGGACTCAAAGAAAAGGCCGCTGACAGAACCGATGGTTGCAGTGTAGGTGTTGATAATATTTGTCCAGAACATGCCTTTGTGTCGGTATGCGGAAGGCGAAGAGAAATGGAGGACGCGGTTTCGATTCTCCCGGCTTTTAATTGCACAAAAAATGAAAGCAATACGAAGAGCGATCCGGCGCTGCACTTTTTTGGCGTCTACGATGGCCATGGCGGATCGCAGGCGGCCTTGTTCTGTAAAGAACGCCTCCACGAGGTTCTCGCGGAGGAGTTGAGGATTTTCGGCGGCAACGCGCAGGACGGGACGCAATGGCAGCAGCTCACGAGCGCTTGTTTTGGGAGAGTGGACGCCGAGATCTTATCCGGCGGTATTGTGTGCAGAAATGACTGCATAACCCGCGAAGGGAATAATGAGTGTTCTTGCGGGCAGAGAATAACATCTGAGGCTGTGGGAACTACTGCAGTGGTGGCTATTGTTGGATCTAGCCAAATCGTCGTCGCTAACTGTGGCGATTCGCGGGCCATATTGTCGCGAGGCGGAAGGCCCGTCGTTTTATCACAAGATCACAAGCCAGATCGGCCGGATGAAATGGAGCGCATAGAGGCAGCTGGCGGGCGCGTATTTTTTTGGAACGGCCCTCGCGTTCTTGGCGTCCTGGCCATGTCCAGGGCTATAGGCGACAAATACCTAAAGCCCTATGTCATCGCCAAGCCAGAGGTGACAATCAATGCCCGAAGCGACGAAGACGAATTCTTAATTCTGGCAAGCGACGGGCTCTGGGACGTGCTCTCCAACGAAGTCGTGTGCGAGGTTGCCAGGAGATGTCTGTCGGGTCGATCACACAGAAGCTACGGCGGTCTTCAGGCAGAGGGCCGAGATGACAGTCCCGCGGCTATCGCTGCAGCGTTGCTGACAAAGCTGGCGATTGCTCGAGGTAGCCAAGACAATATTACCGTAGTTGTCGTGGATTTACAGAGACGCCGACGCCATCAGAGCAGATGA___CTATTCATTCCTTATTATGTATTTCTTGGTACGATACATT

Fln Alignment:

Contig8136___CPEHAFVSVCGRRREMEDAVSILPAFNCTKNESNTKSDPALH---------FFGVYDGHGGSQAALFCKERLHEVLAEELRIF------GGNA----QDGTQWQQLTSACFGRVDAEILSGGIVCRNDCITREGNNECSCGQRITSEXXXXXXXXXXXGSSQIVVANCGDSRAILSRGGRPVVLSQDHKPDRPDEMERIEAAGGRVFFWNGPRVLGVLAMSRAIGDKYLKPYVIAKPEVTINARSDEDEFLILASDGLWDVLSNEVVCEVARRCLSGRSHRSYGGLQAEGRDDSPXXXXXXXXXXXXXARGSQDNITVVVVDL
Q5SN75_________________CVSHGAVSVIGRRREMEDAIFVAAPFLAASKEAAVEGSGVAEEEGKEEDEGFFAVYDGHGGSRVAEACRERMHVVLAEEVRVRRLLQGGGGGADVEDEDRARWKEAMAACFTRVDGEV--------------GGAEEADTGEQTVGSTAVVAVVGPR----RIVVANCGDSRAVLSRGGVAVPLSSDHKPDRPDEMERVEAAGGRVINWNGYRILGVLATSRSIGDYYLKPYVIAEPEVTVMDRTDKDEFLILASDGLWDVVSNDVACKIARNCLSGRAASKY----PESVSGSTAADAAALLVELAISRGSKDNISVVVVEL

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
85	25	75			0.996473
87	75		25		0.996473
88		75		25	0.996473
194	33		66		0.997452
195	33	66			0.997452
197			33	66	0.997452
198		66		33	0.997452
268	20		80		0.995493
269		80		20	0.995493
270		80	20		0.995493
271		80		20	0.995493
345	16			83	0.994512
347			83	16	0.994512
349			83	16	0.994512
372	16		83		0.994512
374	16	83			0.994512
375		83		16	0.994512
657	16			83	0.994512
662	20			80	0.995493
666			80	20	0.995493
1426	33	66			0.997452
1427		33	66		0.997452
1430		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain