SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8130

Length: 261 nt

UniGene Fasta

>biog3_v1.0_unigene8130
AATGTGTGATCTTATACACAGGATGCAACAATGTGTCGGAACAGGTTCAAGCCATGGCTGTTCCCAAGAACCCATCGGATCCTTTGTTGCGGGAGTGGAAGAAGATCCCGAAGAATCCAATCATGGTGCCTACTGGCATCAACACCAGTTCCTTCAGAGATCCAACGACGGCATGGCTGGGATCGGACCAAAGATGGCGACTTCTGGTCGGCAGCAAAAGGGATAAGAATAAGGTGGGAGTGACATTGATCTTCAGACATT

Ace file of the UniGene biog3_v1.0_unigene8130

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene79	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Cell wall invertase n=2 Tax=Fragaria x ananassa RepID=Q9ZP42_FRAAN	-	-	56%
FL-Next	sp=Beta-fructofuranosidase, insoluble isoenzyme CWINV1; Arabidopsis thaliana (Mouse-ear cress).	-	-	59%
Blast2go	achain crystal structure of a cell-wall invertase from arabidopsis thaliana in complex with sucrose	-	-	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-fructofuranosidase.	EC:3.2.1.26	-	0.0	68%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	68%
Blast2go	Starch and sucrose metabolism	00500	68%
Blast2go	Metabolic pathways	01100	68%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	68%
Blast2go	beta-fructofuranosidase activity	GO:0004564	Molecular Function	68%
Blast2go	cell wall	GO:0005618	Cellular Component	68%
Blast2go	response to karrikin	GO:0080167	Biological Process	68%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Glycoside hydrolase, family 32	IPR001362	-	-
Sma3	Histone H4	IPR001951	-	-
Sma3	Glycosyl hydrolases family 32, N-terminal	IPR013148	-	-
Sma3	Glycosyl hydrolase family 32, C-terminal	IPR013189	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Glycoside hydrolase, family 32, active site	IPR018053	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q43866

Fln msg: Distance to subject end: 359 aas, your sequence is shorter than subject: 86 - 584

Fln protein: CVILYTGCNNVSEQVQAMAVPKNPSDPLLREWKKIPKNPIMVPTGINTSSFRDPTTAWLGSDQRWRLLVGSKRDKNKVGVTLIFRH

Protein Length: 87

Fln nts: AATGTGTGATCTTATACACAGGATGCAACAATGTGTCGGAACAGGTTCAAGCCATGGCTGTTCCCAAGAACCCATCGGATCCTTTGTTGCGGGAGTGGAAGAAGATCCCGAAGAATCCAATCATGGTGCCTACTGGCATCAACACCAGTTCCTTCAGAGATCCAACGACGGCATGGCTGGGATCGGACCAAAGATGGCGACTTCTGGTCGGCAGCAAAAGGGATAAGAATAAGGTGGGAGTGACATTGATCTTCAGACATT

Fln Alignment:

Contig8130___VILYTGCNNVSEQVQAMAVPKNPSDPLLREWKKIPKNPIMVP---TGINTSSFRDPTTAWLGSDQRWRLLVGSKRDKNKVGVT
Q43866_________________VILYTGIDPKNQQVQNIAEPKNLSDPYLREWKKSPLNPLMAPDAVNGINASSFRDPTTAWLGQDKKWRVIIGSKIHRRGLAIT

SNPs (tot: 3)

Position	A %	G %	T %	Probability
215	25	75		0.996473
218	75		25	0.996473
219	75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain