SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8129

Length: 1705 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene8129

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13164	34/42
SustainPine v2.0	sp_v2.0_unigene18133	8/42

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase n=1 Tax=Picea sitchensis RepID=A9NVV0_PICSI	-	-	82%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	pectin methylesterase	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pectinesterase.	EC:3.1.1.11	-	0.0	66%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	66%
Blast2go	Starch and sucrose metabolism	00500	66%
Blast2go	Metabolic pathways	01100	66%

Source	GOs	Term	Type	Identity
Blast2go	cell wall modification	GO:0042545	Biological Process	66%
Blast2go	negative regulation of catalytic activity	GO:0043086	Biological Process	66%
Blast2go	pectinesterase activity	GO:0030599	Molecular Function	66%
Blast2go	aspartyl esterase activity	GO:0045330	Molecular Function	66%
Blast2go	enzyme inhibitor activity	GO:0004857	Molecular Function	66%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	66%
Blast2go	cell wall	GO:0005618	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
1499	22			77	0.999999
1500	22	77			0.999999
1505	22		77		0.999999
1506	77		22		0.999999
1511	12		87		0.992554
1513	12		87		0.992554
1517	85	14			0.993533
1522	85			14	0.993533
1534	14		85		0.993533
1540		14		85	0.993533
1568	83		16		0.994512
1583		16		83	0.994512
1584	16		83		0.994512
1585			83	16	0.994512
1586			83	16	0.994512
1604	25			75	0.996473
1624		75		25	0.996473
1629	25			75	0.996473
1630		25		75	0.996473
1632		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain