SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8116

Length: 348 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene8116
AATGTAATACCAAGACAGATATATACAGCTTTGGCATTCTCCTGTTAGAAATACTCATTGGCAAGAAACCAGGCAAGAATGAGAGCTCTGGTGAAATTGTGGATTTGCCTTCTATTGTGAAGACTGCTGTATTGGAGGAGAGTACGTTGGAGCTGTTTGATGTTGATATCTTGAGGGGATTGAGAAGTCCTGTAGATGATGGATTACTTCGAGCACTTCAAATTGCCATGGGTTGCTGTGCACCTTCTCCATCGGTGAGACCAGATATTAAAGCTGTCATCCAACAACTCGAGGAGATAAGGCCGAAGACTCATTCTGCTTTTATATACTCCCACTGATACTAGGAGT

Ace file of the UniGene biog3_v1.0_unigene8116 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18855	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein kinase PBS1, putative n=1 Tax=Ricinus communis RepID=B9S563_RICCO	-	-	4.0e-31	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	kinase-like protein tmkl1-like	-	-	3.33653e-38	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.33653e-38	82%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP80

Fln msg: your sequence is shorter than subject: 112 - 657

Fln protein: CNTKTDIYSFGILLLEILIGKKPGKNESSGEIVDLPSIVKTAVLEESTLELFDVDILRGLRSPVDDGLLRALQIAMGCCAPSPSVRPDIKAVIQQLEEIRPKTHSAFIYSH*

Protein Length: 113

Fln nts: AATGTAATACCAAGACAGATATATACAGCTTTGGCATTCTCCTGTTAGAAATACTCATTGGCAAGAAACCAGGCAAGAATGAGAGCTCTGGTGAAATTGTGGATTTGCCTTCTATTGTGAAGACTGCTGTATTGGAGGAGAGTACGTTGGAGCTGTTTGATGTTGATATCTTGAGGGGATTGAGAAGTCCTGTAGATGATGGATTACTTCGAGCACTTCAAATTGCCATGGGTTGCTGTGCACCTTCTCCATCGGTGAGACCAGATATTAAAGCTGTCATCCAACAACTCGAGGAGATAAGGCCGAAGACTCATTCTGCTTTTATATACTCCCACTGA___TACTAGGAGT

Fln Alignment:

Contig8116___NTKTDIYSFXXXXXXXXXXXXXXKNES-SGEIVDLPSIVKTAVLEESTLELFDVDILRGLRSPVDDGLLRALQIAMGCCAPSPSVRPDIKAVIQQLEEIRPKTHS
B8LP80_________________NTKTDIYSFGIFLLEILMGKRPGRNASASDEIVDLPSIVKAAVLEERTMQIFDPEILRGIRSPADDGLLHALQLAMGCCAPSPAVRPDIKEVVRQLEELRPKMHS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
118	20	80			0.995493
119		80		20	0.995493
120		80	20		0.995493
121	80			20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain