SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8068

Length: 248 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene8068
GAGCTGTTGAAATTAAGGTGCCACGTGGATGGAATAAATGTGAAGTTGCAAAAGAAGAATACAATGTTGATGACTGGTCACTGCAAAATATTCCTCAAGTGCTTGTCCCTATTGCAAATAGATCAGATGAGATGGAAATTGTTATAGTTGTAGATGTTTTGAGGAGAGCCAAAGCAAATGTCGTGGTTGCTTCTGTGGAGGAGAGTCTACATTTTGTGGCAGCAAGAGGCACAAAAATTGTTGACATT

Ace file of the UniGene biog3_v1.0_unigene8068 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2516	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DJ-1_PfpI domain containing protein	-	-	2.0e-24	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	protein	-	-	0.0	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	ThiJ/PfpI	IPR002818	-	-
Sma3	DJ-1	IPR006287	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1Y3

Fln msg: Distance to subject end: 131 aas, your sequence is shorter than subject: 82 - 376

Fln protein: AVEIKVPRGWNKCEVAKEEYNVDDWSLQNIPQVLVPIANRSDEMEIVIVVDVLRRAKANVVVASVEESLHFVAARGTKIVDI

Protein Length: 83

Fln nts: GAGCTGTTGAAATTAAGGTGCCACGTGGATGGAATAAATGTGAAGTTGCAAAAGAAGAATACAATGTTGATGACTGGTCACTGCAAAATATTCCTCAAGTGCTTGTCCCTATTGCAAATAGATCAGATGAGATGGAAATTGTTATAGTTGTAGATGTTTTGAGGAGAGCCAAAGCAAATGTCGTGGTTGCTTCTGTGGAGGAGAGTCTACATTTTGTGGCAGCAAGAGGCACAAAAATTGTTGACATT

Fln Alignment:

Contig8068___IKVPRGWNKCEVAKEEYNVDDWSLQNIPQVLVPIANRSDEMEIVIVVDVLRRAKANVVVASVEESLHFVAARGTKIV
A9P1Y3_________________LMVPRGWNKCEVAKEEYNVDDWSLQNIPQVLVPIANRSDEMEIVVVVDVLRRAKANVVVASVEDSLEIVAARGTKIV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
92	80		20		0.995493
93	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain