SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8044

Length: 1847 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene8044 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17132	136/136

Source	Descriptions	Term	Type	Identity
AutoFact	Vacuolar-processing enzyme, putative n=1 Tax=Ricinus communis RepID=B9RRV3_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	vacuolar-processing enzyme	-	-	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase C13, legumain	IPR001096	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRB9

Fln msg:

Fln protein: MRLCTSAMGSSKRFQLGLLCYFLLLLLASSKVADGARRGWDSILKMPTDHIDDDSDTIGTQWAILLAGSSGYWNYRHQADICHAYQILRKGGLKEENIVVFMYDDIAYDEENPYPGTIINHPQGSDVYAGVPKDYTGENVTVNNFFAVLLGNKSLVTGGSGKVVESDPNDRIFIYYSDHGGPGVLGMPLPPYLYANDFIQVLNQKHDAGSYREMVIYIEACESGSIFEGLLPTDMNIYATTASNAEENSWGTYCPGMDPPPPPEYDTCLGDLYSVAWMEDSEMNNLKEETLLQQYDLVKRRTSNHNTYMSGSHVMQYGNLTISQEELYLYMGFDSANSNASLVLENSLLLERTTAKAINQRDADLLYMWQKYKKSKEDSPERFTAQTQLLEFMAHRMHVDKSVKLVGNLLFGPEKGSSVLKAVRPQGEPLVDDWDCLKKMVRTFERHCGSLAQYGMKHMRALANICNKGISVDTMATVSAEACTQFPAGYWSSLQRGFSA*

Protein Length: 502

Fln nts: AATGTTGATCACTGTGTCGGCGGTGTG_-_ATGCGCCTCTGCACATCTGCGATGGGTTCCTCCAAGCGATTTCAATTAGGCCTGCTGTGCTATTTTCTTCTGCTCTTGTTGGCCTCGAGTAAAGTTGCAGATGGGGCCAGAAGGGGTTGGGATTCAATACTGAAAATGCCCACCGATCATATCGATGATGATAGTGATACGATCGGTACTCAGTGGGCTATTCTGTTGGCTGGTTCTTCCGGTTATTGGAACTACAGGCATCAGGCTGATATCTGCCATGCCTACCAAATTCTGAGGAAGGGCGGTTTGAAAGAGGAAAACATTGTGGTCTTTATGTATGATGATATCGCTTACGATGAAGAGAATCCTTACCCTGGTACTATTATTAATCACCCCCAGGGTAGCGATGTTTATGCAGGCGTCCCTAAGGACTACACAGGCGAGAATGTTACTGTGAACAATTTTTTTGCCGTTCTTCTTGGAAATAAAAGTTTAGTAACGGGTGGAAGTGGAAAAGTTGTTGAAAGTGACCCCAATGATCGTATATTCATCTACTACTCTGATCATGGAGGCCCTGGAGTGCTTGGAATGCCTCTTCCACCTTATCTTTATGCAAATGATTTTATACAAGTCTTGAATCAGAAGCATGATGCTGGCTCTTATAGAGAAATGGTAATATATATTGAAGCATGTGAAAGTGGAAGTATTTTTGAAGGTCTGCTGCCAACAGACATGAACATATATGCTACAACGGCATCAAATGCCGAGGAGAACAGCTGGGGAACTTACTGTCCTGGAATGGACCCCCCTCCTCCTCCAGAATATGACACCTGTCTGGGAGATCTCTATAGTGTTGCATGGATGGAAGACAGTGAAATGAACAACTTGAAAGAGGAAACCTTGTTGCAACAATATGACCTGGTGAAGCGCAGAACCTCCAACCATAATACATACATGTCTGGTTCTCATGTTATGCAATATGGCAACCTCACTATCAGCCAAGAGGAATTGTATCTATATATGGGATTTGACTCTGCCAATTCTAATGCTAGTTTGGTCCTTGAGAACTCGCTACTCTTAGAAAGGACGACAGCCAAGGCAATTAATCAACGAGATGCAGATCTTCTTTACATGTGGCAAAAGTATAAGAAATCAAAGGAGGACTCTCCGGAAAGGTTCACTGCACAGACACAATTGTTGGAATTCATGGCTCATCGTATGCATGTAGACAAGAGTGTAAAGCTTGTTGGAAATCTTTTATTTGGACCAGAAAAGGGCTCTTCTGTTCTAAAAGCTGTGAGACCTCAAGGGGAACCTTTGGTAGATGACTGGGACTGTCTTAAGAAAATGGTACGGACTTTTGAAAGACACTGTGGATCTCTGGCCCAGTATGGCATGAAACACATGCGTGCTCTAGCAAATATATGCAATAAAGGTATCAGCGTGGATACTATGGCCACAGTTTCTGCTGAAGCATGCACTCAATTTCCGGCTGGGTACTGGAGTTCCCTTCAAAGAGGGTTCAGTGCTTGA___TAATTCAGGGCTTTCAAATTTCTTCCAGTGAGTGCTTATTGAAATCTCGAGAGACAATTTCCAAGGATGAATGTTCTGTACATAAAAAAACATATATGCTATGACACCTCGTTGCTTTGTTGTTTGCTCAAAAGAAACAGAAAATGTGCAGTCATATGCCCATGGACCGGCATCTGAGCCAAAATTCTTTCTTTATCTACTGCATGCAGAAATTGGAATATGTCATAGGGTGGGGCTTATGCATTTCTTTAGTGATGATCCCATTGCATATCTTGCAGTAAATGTGTATACTTCAAGTAGTTGTATAATATAACATT

Fln Alignment:

Contig8044___MGSSKRFQXXXXXXXXXXXLASSKVADGARRGWDSILKMPTDHIDDDSDTIGTQWAILLAGSSGYWNYRHQADICHAYQILRKGGLKEENIVVFMYDDIAYDEENPYPGTIINHPQGSDVYAGVPKDYTGENVTVNNFFAVLLGNKSLVTGGSGKVVESDPNDRIFIYYSDHXXXXXXXXXXXXXLYANDFIQVLNQKHDAGSYREMVIYIEACESGSIFEGLLPTDMNIYATTASNAEENSWGTYCPGMDXXXXPEYDTCLGDLYSVAWMEDSEMNNLKEETLLQQYDLVKRRTSNHNTYMSGSHVMQYGNLTISQEELYLYMGFDSANSNASLVLENSLLLERTTAKAINQRDADLLYMWQKYKKSKEDSPERFTAQTQLLEFMAHRMHVDKSVKLVGNLLFGPEKGSSVLKAVRPQGEPLVDDWDCLKKMVRTFERHCGSLAQYGMKHMRALANICNKGISVDTMATVSAEACTQFPAGYWSSLQRGFSA
B8LRB9_________________MGSSKGFQLGLLCYFLLLSLDSSKVADGARRDWNSLLKLPTNHVDADSDRIGTEWAVLLAGSSGYWNYRHQADVCHAYQILRRGGLKEENIVVFMYDDIAYDEENPHPGTIINHPQGSDVYAGVPKDYTGEDVTVNNFFAAILGNKSLVTGGSGKVVESGPNDRIFIYYSDHGGPGVLGMPLPPYLYANDFVQVLKKKHDAGSYREMVIYVEACESGSIFEGLLPTDLNIYVTTASNAEENSWGTYCPGMDPPPPPEYDTCLGDLYSVAWMEDSEINNLKEETLLQQYDLVKLRTSNHNTYMSGSHVMQYGNITISQEELYLYMGFDSANSNASLVLENSPLLEKTEAKAINQRDADLLYMWQKYKKSKEDSPERLTAQTQLLEFMAHRMHVDKSVKLVGNLLFGPEKGPAVFNAVRPQGEPLVDDWDCLKKMVRTFEGHCGSLAQYGMKHMRALANICNEGISMDTMATVSAEACTQFPAGSWSSLQRGFSA

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
164	33			66	0.997452
169		66		33	0.997452
263	83		16		0.994512
266	16			16	0.988813
274	14		85		0.993533
277	85			14	0.993533
443	11		88		0.923564
444		88		11	0.923564
445	88		11		0.923564
446		88		11	0.923564
668	11			88	0.999937
669	11		88		0.999937
672		88		11	0.999937
757	11	88			0.999937
1134			90	10	0.90298
1135		90		10	0.90298
1233	88	11			0.923564
1236		90		10	0.90298
1426		87		12	0.992554
1506	11	88			0.923564
1507		11	88		0.923564
1509		11		88	0.923564
1511	10			90	0.90298
1512		88		11	0.923564
1515		87		12	0.992554
1523	85	14			0.993533
1525			85	14	0.993533
1526	83			16	0.994512
1582		20	80		0.995493
1590	11	88			0.923564
1591	11	88			0.923564
1681		10	90		0.90298
1682	11		88		0.923564
1684			77	11	0.968132
1686	12		87		0.992554
1755	11		88		0.923564
1756	88	11			0.923564
1758			87	12	0.992554
1759	75			12	0.975346
1810		20		80	0.995493
1811	20		80		0.995493
1813			80	20	0.995493
1821	25		75		0.996473
1825		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain