SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8035

Length: 2141 nt

UniGene Fasta

>biog3_v1.0_unigene8035
CGGGGGTTGTTCGTTGCTTGTGATGCGGTGTTGTCGGCGACCCGTGTATTCGACTCATGTTACTGATCTGTTGTGTATAGATACGTGAACTTAACAGTGCCCTGGATGAATAATCGGTTAATTTCATCCTGGCTTTGAGATGGACTGCACTGGTATTTTGCTAGCAGTGTCAAGGCTTGTTTAAAAGGCTATAATTTAGGTCGAAAATCATAGTCAGGGAGATGGGTTTTGTGAGTACTTTAGTGGGTTTCCTCGGCTTTGGCGTGGGCGTTACAATTGGTGTTACTATTGGGTATTTCCTTTTCATCTACTTCCAGCCCACTGATGTGAAGGACCCTATTATCAGGCCTCTTGGAGAATTAGATTCAAAGACTTTGGAAGGACTCTTACCTGAAATTCCATTATGGGTGAAAAATCCTGATTATGATAGAGTTGATTGGCTCAACACGTTTATTCATGATATGTGGCCTTATCTTGATAAGGCAATCTGTCGGAAAATAAGAGACACTACAAAGCCTATGATAGACCAATATGTTGGGAAGTTCAAAATAGAATCTATTGAATTTGAAACACTTACATTGGGCACACTTCCTCCTACACTGCAAGGGATGAAAGTCTATGAAACTCAAGAAAAGGAACTGATCATGGAACCTGCTCTCAAATGGGCTGGAAATCCAAATGTGATTGTGGCAGTGAAAGCATTTGGACTAAGGGCAACTCTGCAGATGGTGGATTTGCAGGTATTTGCAGTTCCACGTGTCACACTGAAGCCTCTTGTCCCAAGTTTCCCATGCTTTGCAAAAATATTTGTCTCTCTTATGGAGAAGCCCCATGTTGACTTTGGACTAAAATTACTTGGTGGTGATGTTATGGCTATCCCCGGTCTTTACCAATTTGTCCAGGAAATGATTAAAGAGCAGGTTGCGAACTTATACTTGTGGCCAAAAACACTGGAGGTACCTATTTTGGACCAGAGAGCTACACATAAACCTGTTGGCATGCTCCATGTAAAGGTCATTAAGGCAACTGACTTAAAAAAGAAAGACATGCTGGGTAAGTCCGACCCATATGTAAAGCTCAAGTTGACGGGAGAAAAACTTCCATCAAAGAAACCAAAGTCAAACCAAGTAATCTGAACCCAGAATGGAATGAGGAGTTCAACTTTGTTGTTAAAGATCCAGAATCTCAAGTTCTTGAACTTACTGTCTACGACTGGGAGAAGGTGGGTTCACATGAAAAGATGGGTATGCAAGCTTATCCTTTGAAAGAGCTTACACCATCTGAGACCAGAAGTGTTACGCTGAATCTCCTTAAAACTTTGGATCCAAATGATCCTCAAAATATCAAACCACGTGGACAAATCACGCTAGAGATGACTTATAATCCTTTCAAGGAGGATGAAAATTTACCTGTTGATGAGGACGATAGTGTAGTTGAGAAGGCTCCTGAAGGCGCACCAGCAGGTGGAGGCTTGCTAGTTGTTAGAGTCATTGAGGCTGAGGATGTTGAAGGCAAACACCATACTAATCCTTATGCCCGACTTCTTTTGAAAGGGGAGGAGAGGAAGACTAAGCCTATCAAGAAAAACAGAGATCCAAGGTGGGATCAGGAATTTGAATTTATGTTGGAAGATCCACCTGTCAATGATAAACTCCATGTGGAAGTTATGAGCAAGGGCTCAGGCCTGGCATTGCATTCAAGGGAATCTCTGGGTTATGTTGACATTAATCTATCGGATGTGGTGAATAATAAACGTATCAATGAGAAATATCATCTTATTGATTCGAAGAATGGAAAAATTCAAATCGAGCTGTTGTGGAGAAGTTCTTAACCATCTTGCAGATGTATAATGCATTTGTTAGTCATGGTTATCCGATTTGGGAAAGATGAATTGCCTTTCTTTTGTAATCAGCATATGTTTTATCCAGCTAGCTGAAAGTTCTCATTACACAATGAGGAGGCTGTAGTGTCCTATAAGAATGAGAACCTTGTGTATTCTATTTAACAAAACTTGATTGTGTAAACTCAATTAGTTGCCTATGGCCATCTCCCAACATTTTCTACCTTGGACTTCTCTGTATTACATATCAGTATTGCTGCTGGAAAGAAATAGCTGATTACAAAAGAAAGGCAATTCATCT

Ace file of the UniGene biog3_v1.0_unigene8035

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10762	115/115

Source	Descriptions	Term	Type	Identity
AutoFact	Contains similarity to CaLB protein from Arabidopsis thaliana gb\|X96598 and contains multiple C2 PF\|00168 domains	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	plant synaptotagmin	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	0.0	-
Sma3	C2 membrane targeting protein	IPR018029	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRA0

Fln msg: Overlapping hits, possible frame ERROR between 1112 and 1031,

Fln protein: MGFVSTLVGFLGFGVGVTIGVTIGYFLFIYFQPTDVKDPIIRPLGELDSKTLEGLLPEIPLWVKNPDYDRVDWLNTFIHDMWPYLDKAICRKIRDTTKPMIDQYVGKFKIESIEFETLTLGTLPPTLQGMKVYETQEKELIMEPALKWAGNPNVIVAVKAFGLRATLQMVDLQVFAVPRVTLKPLVPSFPCFAKIFVSLMEKPHVDFGLKLLGGDVMAIPGLYQFVQEMIKEQVANLYLWPKTLEVPILDQRATHKPVGMLHVKVIKATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKVKPSNLNPEWNEEFNFVVKDPESQVLELTVYDWEKVGSHEKMGMQAYPLKELTPSETRSVTLNLLKTLDPNDPQNIKPRGQITLEMTYNPFKEDENLPVDEDDSVVEKAPEGAPAGGGLLVVRVIEAEDVEGKHHTNPYARLLLKGEERKTKPIKKNRDPRWDQEFEFMLEDPPVNDKLHVEVMSKGSGLALHSRESLGYVDINLSDVVNNKRINEKYHLIDSKNGKIQIELLWRSS*

Protein Length: 538

Fln nts: CGGGGGTTGTTCGTTGCTTGTGATGCGGTGTTGTCGGCGACCCGTGTATTCGACTCATGTTACTGATCTGTTGTGTATAGATACGTGAACTTAACAGTGCCCTGGATGAATAATCGGTTAATTTCATCCTGGCTTTGAGATGGACTGCACTGGTATTTTGCTAGCAGTGTCAAGGCTTGTTTAAAAGGCTATAATTTAGGTCGAAAATCATAGTCAGGGAG_-_ATGGGTTTTGTGAGTACTTTAGTGGGTTTCCTCGGCTTTGGCGTGGGCGTTACAATTGGTGTTACTATTGGGTATTTCCTTTTCATCTACTTCCAGCCCACTGATGTGAAGGACCCTATTATCAGGCCTCTTGGAGAATTAGATTCAAAGACTTTGGAAGGACTCTTACCTGAAATTCCATTATGGGTGAAAAATCCTGATTATGATAGAGTTGATTGGCTCAACACGTTTATTCATGATATGTGGCCTTATCTTGATAAGGCAATCTGTCGGAAAATAAGAGACACTACAAAGCCTATGATAGACCAATATGTTGGGAAGTTCAAAATAGAATCTATTGAATTTGAAACACTTACATTGGGCACACTTCCTCCTACACTGCAAGGGATGAAAGTCTATGAAACTCAAGAAAAGGAACTGATCATGGAACCTGCTCTCAAATGGGCTGGAAATCCAAATGTGATTGTGGCAGTGAAAGCATTTGGACTAAGGGCAACTCTGCAGATGGTGGATTTGCAGGTATTTGCAGTTCCACGTGTCACACTGAAGCCTCTTGTCCCAAGTTTCCCATGCTTTGCAAAAATATTTGTCTCTCTTATGGAGAAGCCCCATGTTGACTTTGGACTAAAATTACTTGGTGGTGATGTTATGGCTATCCCCGGTCTTTACCAATTTGTCCAGGAAATGATTAAAGAGCAGGTTGCGAACTTATACTTGTGGCCAAAAACACTGGAGGTACCTATTTTGGACCAGAGAGCTACACATAAACCTGTTGGCATGCTCCATGTAAAGGTCATTAAGGCAACTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAAGTCAAACCAAGTAATCTGAACCCAGAATGGAATGAGGAGTTCAACTTTGTTGTTAAAGATCCAGAATCTCAAGTTCTTGAACTTACTGTCTACGACTGGGAGAAGGTGGGTTCACATGAAAAGATGGGTATGCAAGCTTATCCTTTGAAAGAGCTTACACCATCTGAGACCAGAAGTGTTACGCTGAATCTCCTTAAAACTTTGGATCCAAATGATCCTCAAAATATCAAACCACGTGGACAAATCACGCTAGAGATGACTTATAATCCTTTCAAGGAGGATGAAAATTTACCTGTTGATGAGGACGATAGTGTAGTTGAGAAGGCTCCTGAAGGCGCACCAGCAGGTGGAGGCTTGCTAGTTGTTAGAGTCATTGAGGCTGAGGATGTTGAAGGCAAACACCATACTAATCCTTATGCCCGACTTCTTTTGAAAGGGGAGGAGAGGAAGACTAAGCCTATCAAGAAAAACAGAGATCCAAGGTGGGATCAGGAATTTGAATTTATGTTGGAAGATCCACCTGTCAATGATAAACTCCATGTGGAAGTTATGAGCAAGGGCTCAGGCCTGGCATTGCATTCAAGGGAATCTCTGGGTTATGTTGACATTAATCTATCGGATGTGGTGAATAATAAACGTATCAATGAGAAATATCATCTTATTGATTCGAAGAATGGAAAAATTCAAATCGAGCTGTTGTGGAGAAGTTCTTAA___CCATCTTGCAGATGTATAATGCATTTGTTAGTCATGGTTATCCGATTTGGGAAAGATGAATTGCCTTTCTTTTGTAATCAGCATATGTTTTATCCAGCTAGCTGAAAGTTCTCATTACACAATGAGGAGGCTGTAGTGTCCTATAAGAATGAGAACCTTGTGTATTCTATTTAACAAAACTTGATTGTGTAAACTCAATTAGTTGCCTATGGCCATCTCCCAACATTTTCTACCTTGGACTTCTCTGTATTACATATCAGTATTGCTGCTGGAAAGAAATAGCTGATTACAAAAGAAAGGCAATTCATCT

Fln Alignment:

Contig8035___YFLFIYFQPTDVKDPIIRPLGELDSKTLEGLLPEIPLWVKNPDYDRVDWLNTFIHDMWPYLDKAICRKIRDTTKPMIDQYVGKFKIESIEFEXXXXXXXXXXXQGMKVYETQEKELIMEPALKWAGNPNVIVAVKAFGLRATLQMVDLQVFAVPRVTLKPLVPSFPCFAKIFVSLMEKPHVDFGLKLLGGDVMAIPGLYQFVQEMIKEQVANLYLWPKTLEVPILDQRATHKPVGMLHVKVIKATDxxxxxxxxxxxxxxxxxxxxxxxxxxxTKVKPSNLNPEWNEEFNFVVKDPESQVLELTVYDWEKVGSHEKMGMQAYPLKELTPSETRSVTLNLLKTLDPNDPQNIKPRGQITLEMTYNPFKEDENLPVDEDDSVXXXXXXXXXXXXXXXXXRVIEAEDVEGKHHTNPYARLLLKGEERKTKPIKKNRDPRWDQEFEFMLEDPPVNDKLHVEVMSKGSGLALHSRESLGYVDINLSDVVNNKRINEKYHLIDSKNGKIQIELLWRSS
B8LRA0_________________YFLFIYFQPTDVKDPIIRPLGELDSKTLEGLLPEIPLWVKNPDYDRVDWLNTFIHEMWPYLDKAICQIIRDKTKPMIEQYVGKFKIESIEIETLTLGTLPPTLQGMKVYDTQEKELIMEPVLKWAGNPNVIVAVKAFGLRATVQLVDLQVFAIPRVTLKPLVPSFPCFAKIFVSLMEKPHVDFGLKLLGGDLMAIPGLYQFAQEMIKEQVANLYLWPKTLEVPILDQRATHKPVGMLHVKVVRAINxxxxxxxxxxxxxxxxxxxxxxxxxxxTTVKSSNLNPEWNEEFKFVVKDPESQALELSVYDWEKVGSHEKMGIQTYDLKELTPSETKSVTLNLLKSLDPNDPQNAKARGQITIEMTYNPFKEDENSPADDEDSVVEKAPEGTPAGGGLLVVRVLEAEDVEGKHHTNPYVRLLFKGEEKKTKPVKKNRDPRWDQEFEFMLEDPPVNDKIHVEVMSKGSSLALHSRESLGYVDINLSDVVNNKRINEKYHLIDSKNGKLQLELLWRSS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
54	25	75			0.996473
56		75	25		0.996473
57	75			25	0.996473
223	33			66	0.997452
224			66	33	0.997452
226			66	33	0.997452
1962	25		75		0.996473
1963		25	75		0.996473
1965			75	25	0.996473
1966			75	25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain