SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8003

Length: 806 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene8003

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene493	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	F-box/LRR-repeat protein 3 [Arabidopsis thaliana] sp\|Q8RWU5.1\|FBL3_ARATH RecName: Full=F-box/LRR-repeat protein 3 gb\|AAM14053.1\| putative F-box protein family, AtFBL3 [Arabidopsis thaliana] gb\|AAM67471.1\| putative F-box family protein AtFBL3 [Arabidopsis	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	21%
Blast2go	protein	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease A	IPR001427	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A998

Fln msg: Overlapping hits, possible frame ERROR between 649 and 649, Distance to subject end: 25 aas, atg_distance in limit (1-15): atg_distance = 13, W2: There is no M at the beginning, your sequence is shorter than subject: 268 - 335

Fln protein: LLYSVAALNLAYCIPVTNALLASFDKYDSLQSIRFDGCEISSSGLKSIGKSCKSLMELSLSKCTGVTDEGISALVGGCTGLKILDINRCRDLTDVAITAVATSCGNLSCLKMESCALVTERSLYMLGDRCPFLEVLDLTDCSVSNTGLKSISRCTGLTTLKLGLCENISNEGITHIAAHCSNLQEIDLYRSVGIGDTGLAALASGCPKLRMVNLSxxIGITDHGLKSLAQLEKLYNLEIRGCFLVTSAGISAIASGCKRLVELDIKRT

Protein Length: 269

Fln nts: ACTGTTGTATAGCGTTGCAGCACTAAACTTAGCCTATTGCATCCCTGTCACAAATGCTCTTCTTGCGAGCTTCGACAAATATGACAGCCTGCAATCCATACGATTTGATGGCTGTGAAATTTCTAGCTCAGGTTTGAAGTCTATTGGGAAAAGCTGCAAGTCTCTGATGGAATTGAGCTTAAGCAAGTGTACTGGAGTGACAGATGAAGGAATCTCTGCACTAGTGGGAGGCTGCACAGGGTTGAAAATTCTAGATATCAACCGTTGCCGTGATCTCACTGATGTTGCTATCACAGCTGTTGCAACATCTTGTGGAAATCTTTCATGTCTTAAGATGGAATCCTGTGCCCTGGTCACTGAGAGAAGCTTATATATGCTAGGAGATCGCTGCCCCTTTCTAGAAGTACTAGATCTCACCGATTGTAGTGTAAGCAATACAGGACTGAAATCCATTTCCAGGTGCACTGGATTGACTACCTTGAAACTAGGCCTATGCGAAAATATATCCAATGAGGGTATAACCCATATTGCTGCTCACTGTTCAAACCTTCAAGAGATTGATTTATACAGGTCTGTGGGAATTGGTGATACTGGATTAGCAGCACTTGCCAGTGGTTGTCCAAAGCTCAGAATGGTCAATCTCTCAxxxxxxATAGGTATCACAGATCATGGGCTGAAATCTCTGGCTCAACTAGAAAAACTTTACAACCTTGAGATTCGGGGTTGCTTCCTTGTAACATCTGCAGGGATTTCTGCCATTGCCTCGGGATGTAAGCGTCTGGTAGAGTTGGATATCAAGAGGACATT

Fln Alignment:

Contig8003___ALNLAYCIPVTNALLASFDKYDSLQSIRFDGCEXXXXXXXXXXXXXXXXMELSLSKCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
D5A998_________________SINISYCINVTDNSMKSISRLQKLHNLEIRG-------------------------Cxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
74		66	33		0.997452
219	20		80		0.995493
222		80		20	0.995493
262	66	33			0.997452
264	33	33		33	0.997753
265			33	66	0.997452
574	33		66		0.997452
575		33		66	0.997452
576	33	66			0.997452
578			66	33	0.997452
633		33	66		0.997452
635	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain