SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7981

Length: 907 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7981

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26007	1/14
SustainPine v2.0	sp_v2.0_unigene28436	13/14

Source	Descriptions	Term	Type	Identity
AutoFact	SURNod19 domain containing protein	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	68%
Blast2go	19-like protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Stress up-regulated Nod 19	IPR011692	-	0.0	-
Sma3	Phospholipase A2, active site	IPR013090	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RA49

Fln msg: Separated hits, possible frame ERROR between 375 and 377, Unexpected STOP codon at 3' end. Distance to subject end: 48 aas, your sequence is shorter than subject: 279 - 467

Fln protein: NVYIIAGNDGICQDHSLGQIFGLGSETRHTSTFIPDPYGIVVGDPKQIPEGYEVDWMLNVHAIDTRGVVNSLGCTECRCNLYNVTKDEYGRPLRENYIGGLYCCYEGTQCQLKEGFQGENRTLYxxKYTVYWMNWDESIVPVRTYILDVTDTGERSNGSSRGVGCQVEYDVAPCSAGSPPSECIDTREAHMAIPQGGMSFMVLHTNILEDLVRYFMVKMVERFVHPYHFMVKEASPVMKLVMSLE*AHVILSLEV*RFIMKL*NYRPNTADKSGTQVL*

Protein Length: 280

Fln nts: AATGTCTATATCATTGCAGGGAATGATGGTATTTGTCAGGATCACTCTCTTGGTCAAATATTTGGCCTTGGGTCTGAAACACGTCATACTAGCACCTTCATACCCGATCCATATGGTATTGTTGTCGGAGATCCTAAACAGATTCCTGAAGGATATGAAGTGGATTGGATGCTGAATGTGCATGCCATTGATACAAGAGGGGTTGTAAATTCACTAGGTTGTACAGAATGCAGATGCAACCTTTACAATGTAACTAAAGATGAATATGGTCGTCCACTAAGAGAAAATTATATTGGAGGTCTATATTGTTGTTATGAAGGGACGCAATGTCAACTAAAAGAGGGCTTTCAAGGAGAGAATAGGACACTCTACTTxxxGAAATACACTGTGTATTGGATGAACTGGGACGAAAGTATTGTCCCAGTTAGAACATATATCCTTGATGTTACAGATACTGGAGAGCGGTCTAATGGTTCATCAAGAGGTGTTGGTTGCCAGGTTGAATACGATGTTGCACCATGCTCTGCTGGAAGTCCTCCTAGTGAATGCATTGACACTCGGGAAGCACACATGGCTATACCACAGGGGGGGATGTCATTTATGGTGTTGCACACCAACATACTGGAGGACTTGGTTCGGTACTTTATGGTCAAGATGGTCGAGAGATTTGTTCATCCTTACCACTTTATGGTCAAGGAAGCGAGCCCGGTAATGAAACTGGTTATGTCGTTGGAATGAGCACATGTTATCCTGAGCCTGGAAGTGTAAAGATTTATAATGAAACTCTGAAATTACAGGCCAAATACAGCAGACAAATCAGGCACACAGGTGTTATGAATCTGTTCTATCTTCTCATAGCAGACTCTGTACACGACGTTTCTGTCACCTCTTATTGAGAGTATATACATT

Fln Alignment:

Contig7981___IIAGNDGICQDHSLGQIFGLGSETRHTSTFIPDPYGIVVGDPKQIPEGYEVDWMLNVHAIDTRGVVNSLGCTECRCNLYNVTKDEYGRPLRENYIGGLYCCYEGTQCQLKEGFQGENRTLYLxKYTVYWMNWDESIVPVRTYILDVTDTGERSNGSSRGV----GCQVEYDVAPC-SAGSPPSECIDTREAHMAIPQGG
B9RA49_________________IPAGNSGICQAHVLGQYFGLGSETRKTDTHVPDPYGIEIGNPAEIPQGYEERWVLNIHAIDTRGVQDRLGCTECKCDLYNVTVDEYGDPLRPEYKGGLLCCYDRTQCKVKQGFQGARRSLYLxRYTVKWVDWDSTIIPVKIFIFDVTDTGKRLNGSS-GISPQNGCQIEYEVKSCNAAGVAVDGCTDVKRTSLTMPTGG

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
40	33		66		0.997452
46	33			66	0.997452
63	33			66	0.997452
69			33	66	0.997452
105		66		33	0.997452
137	66	33			0.997452
296	16		83		0.994512
297	83	16			0.994512
298	16		83		0.994512
299			83	16	0.994512
319	20		80		0.995493
320		25	75		0.996473
321	25		75		0.996473
322	75			25	0.996473
323		75		25	0.996473
329	33		66		0.997452
333	66			33	0.997452
334		66		33	0.997452
404	33		66		0.997452
406		66		33	0.997452
701		80		20	0.995493
812	33	66			0.997452
813		33	66		0.997452
815	66			33	0.997452
816	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain