SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7977

Length: 504 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene7977
GGTCAAAGCTCCTAAAAAGGAGGGGTTTTTCAGGGCAGACAAGATTGATCTGAAGAATTTAGATGCCCAGTTAGAGAGACATCTGTCGAAGGTATGGACTCTGGAGAAGGAGGCCAACAGACCGAAGGAGGACTGGGAAATCGACCTTAAGCAATTGGTTCTCAAGGGTAAGATAGCCCAGGGCGCTTTTGGCAGTGTATATAGAGGAGTCTTGGATGGTCAGGACGTTGCAGTAAAACTGCTCGACTGGGGAGAAGAGCAAACGAAATCAGAAGCTGAAGTAGCTGCATTAAGATCTGCATTTCGTCAAGAAGTGGCTGTATGGCATACACTGGACCATCGCAATGTAACAAAGTTTCTGGGAGCTTCAATGGGTTCATCAGATCTTAATGTGAATCCAAATGGTGCTGAAGGTAGCATTGAAGGTCCACCCAATGCTTGTTGTGTTGTTGTAGAGTATCTTGTCGGAGGAACACTGAAGGCCTACCTTATACATTATCGAAG

Ace file of the UniGene biog3_v1.0_unigene7977 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4540	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	serine threonine-protein kinase ht1-like	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	0.0	82%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	82%
Blast2go	non-membrane spanning protein tyrosine kinase activity	GO:0004715	Molecular Function	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	ApaG domain	IPR007474	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR015783	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXM3

Fln msg: Distance to subject end: 189 aas, your sequence is shorter than subject: 167 - 390

Fln protein: VKAPKKEGFFRADKIDLKNLDAQLERHLSKVWTLEKEANRPKEDWEIDLKQLVLKGKIAQGAFGSVYRGVLDGQDVAVKLLDWGEEQTKSEAEVAALRSAFRQEVAVWHTLDHRNVTKFLGASMGSSDLNVNPNGAEGSIEGPPNACCVVVEYLVGGTLKAYLIHYR

Protein Length: 168

Fln nts: GGTCAAAGCTCCTAAAAAGGAGGGGTTTTTCAGGGCAGACAAGATTGATCTGAAGAATTTAGATGCCCAGTTAGAGAGACATCTGTCGAAGGTATGGACTCTGGAGAAGGAGGCCAACAGACCGAAGGAGGACTGGGAAATCGACCTTAAGCAATTGGTTCTCAAGGGTAAGATAGCCCAGGGCGCTTTTGGCAGTGTATATAGAGGAGTCTTGGATGGTCAGGACGTTGCAGTAAAACTGCTCGACTGGGGAGAAGAGCAAACGAAATCAGAAGCTGAAGTAGCTGCATTAAGATCTGCATTTCGTCAAGAAGTGGCTGTATGGCATACACTGGACCATCGCAATGTAACAAAGTTTCTGGGAGCTTCAATGGGTTCATCAGATCTTAATGTGAATCCAAATGGTGCTGAAGGTAGCATTGAAGGTCCACCCAATGCTTGTTGTGTTGTTGTAGAGTATCTTGTCGGAGGAACACTGAAGGCCTACCTTATACATTATCGAAG

Fln Alignment:

Contig7977___KAPKKEGFFRADKIDLKNLDAQLERHLSKVWTLEKEANRPKEDWEIDLKQLVLKGKIAQGAFGSVYRGVLDGQDVAVKLLDWGEEQTKSEAEVAALRSAFRQEVAVWHTLDHRNVTKFLGASMGSSDLNV-NPNGAEGS-IEGPPNACCVVVEYLVGGTLKAYLIHYR
A9NXM3_________________RSPNKSEFFRADQIDLTNLD----RHLSRVWT-KAEARRPKEEWEIDLKKLDIKSIIAQGTFGTVYRGVYDGQDVAVKLLDWGEQGTKTESEIAQIRVSFEQEVAVWHKLDNQNVTKFIGASMGTSELRIPAQNSLNGDLIQVPSRTCCVVVEYLAGGTLKNYLIKNR

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
119		14	85		0.993533
202	83			16	0.994512
207	83			16	0.994512
240	11	88			0.923564
241	11		88		0.923564
284	12		87		0.992554
286		87	12		0.992554
287		87		12	0.992554
428	16			83	0.994512
429		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain