SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7925

Length: 366 nt

UniGene Fasta

>biog3_v1.0_unigene7925
AATGTGATGGATCCACACCAGAGACCTGTCATTGGGCAGATGGGTTTCCACTAAATCTGTGGCTATATCAAATGCTTCTTAGAGCCTGCTTTGATAGTGGAGAAGAAACAGCTGTTATTGATGAAATTGATGAATTGATGGAGATGATGAAGAAAACCTGGGCTTTGTTGGGCATTAATCAAATGCTTCACAACATTTGCTTCACATGGGTTATATTCCAACAATTTTTGATGACAGGGCAAATTGATACTGATCTGCTTGGAGCAGCAGAAAACCAATTGGTTGAGGTTGCCAAGGATGCCAAGACAGTCAAGGATCCGTTGTATGTCAAGGTACTAAGTTCTACTCTGAGTGCAATTCAAGGCT

Ace file of the UniGene biog3_v1.0_unigene7925

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4754	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	DUF810 domain containing protein	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	uncharacterized protein	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	Protein of unknown function DUF810	IPR008528	-	-
Sma3	Munc13 homology 1	IPR014770	-	-
Sma3	Mammalian uncoordinated homology 13, domain 2	IPR014772	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NX86

Fln msg: Distance to subject end: 312 aas, your sequence is shorter than subject: 121 - 687

Fln protein: CDGSTPETCHWADGFPLNLWLYQMLLRACFDSGEETAVIDEIDELMEMMKKTWALLGINQMLHNICFTWVIFQQFLMTGQIDTDLLGAAENQLVEVAKDAKTVKDPLYVKVLSSTLSAIQG

Protein Length: 122

Fln nts: AATGTGATGGATCCACACCAGAGACCTGTCATTGGGCAGATGGGTTTCCACTAAATCTGTGGCTATATCAAATGCTTCTTAGAGCCTGCTTTGATAGTGGAGAAGAAACAGCTGTTATTGATGAAATTGATGAATTGATGGAGATGATGAAGAAAACCTGGGCTTTGTTGGGCATTAATCAAATGCTTCACAACATTTGCTTCACATGGGTTATATTCCAACAATTTTTGATGACAGGGCAAATTGATACTGATCTGCTTGGAGCAGCAGAAAACCAATTGGTTGAGGTTGCCAAGGATGCCAAGACAGTCAAGGATCCGTTGTATGTCAAGGTACTAAGTTCTACTCTGAGTGCAATTCAAGGCT

Fln Alignment:

Contig7925___DGSTPETCHWADGFPLNLWLYQMLLRACFDSGEETAVIDEIDELMEMMKKTWALLGINQMLHNICFTWVIFQQFLMTGQIDTDLLGAAENQLVEVAKDAKTVKDPLYVKVLSSTLSAIQG
A9NX86_________________DGSTPETCHWADGFPLNLWLYQMLLRACFDSGEETVVIDEIDELMELMKKTWALLGINQMLHNICLTWVLFQQFLMTGQIETDLLGAAENQLDEVAKDAKAVKDPLYVKVLSSTLSAIQG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
56	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain