SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7922

Length: 1527 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7922

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8019	90/92

Source	Descriptions	Term	Type	Identity
AutoFact	vesicle-associated membrane protein 722 [Arabidopsis thaliana] sp\|P47192.2\|VA722_ARATH RecName: Full=Vesicle-associated membrane protein 722; Short=AtVAMP722; AltName: Full=Synaptobrevin-related protein 1 gb\|AAL31896.1\|AF419564_1 At2g33120/F25I18.14 [Arab	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	vesicle-associated membrane synaptobrevin 7b	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	94%
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	94%
Blast2go	mRNA export from nucleus	GO:0006406	Biological Process	94%
Blast2go	protein binding	GO:0005515	Molecular Function	94%
Blast2go	GTP binding	GO:0005525	Molecular Function	94%
Blast2go	cytosol	GO:0005829	Cellular Component	94%
Blast2go	peripheral to membrane of membrane fraction	GO:0000300	Cellular Component	94%
Blast2go	nuclear membrane	GO:0031965	Cellular Component	94%
Blast2go	integral to membrane	GO:0016021	Cellular Component	94%
Blast2go	endosome	GO:0005768	Cellular Component	94%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	94%
Blast2go	chloroplast	GO:0009507	Cellular Component	94%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	94%
Blast2go	plasma membrane	GO:0005886	Cellular Component	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Longin	IPR010908	-	0.0	-
Sma3	Synaptobrevin	IPR001388	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNA8

Fln msg:

Fln protein: MGQQSLIYSFVARGTVVLAEYTEFKGNFTSIAAQCLQKLPASNNKFTYNCDNHTFNYLVEDGFAYCVVADESVGRQVPMAFLERVKEDFKRRYGGGRADTAVANSLNKDFGSKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDKTENLRFQAQDFQKKGTELRRKMWFQNMKVKLIVLGIVVALILIIVLSICHGFNCSKK*

Protein Length: 224

Fln nts: CGGGTCCGCAACCTGAAGCGTTTTAGGCGGTCAGGTGGAAGAAGGGGGACAAGGGAGAACCTGAAGATTTGTTTGAATTAAGCTGTCATCGGGCAGGGCAAGCAGGTCTTCATATCTCTGCAATATATATCTATATGCGGCAGACCTTGTTTAGGCAATCTATTGTTTCGGGTATAAGTAGGGAAGTTTCCTCATTCTGTAGGATTCTTAAACGAATTTCTAGGGCCACGGAATGCGTCAAATTGCACATACCCACGCCTCCTTTCTTATAACAGGTTTACGCGCGATTTCTTCCCTTCTAGAAGGCCTCTTCCTCCTTTACTAAATCGGGTGTGGTTTCATCAGTTTTCTCCACAAAATCCCTGAAGTTCTCTTAATTTTTTCGAGAGTCGGTTTTTTATAGTGTTATCTACGGTTAATATCAGTGAAGGGCCTTTAGATCCGAAGGTACT_-_ATGGGGCAGCAATCTCTGATATACAGTTTTGTTGCGAGGGGCACCGTGGTGCTTGCGGAGTACACGGAATTCAAAGGCAATTTTACAAGTATTGCCGCTCAGTGCCTGCAAAAGCTTCCCGCCAGCAACAACAAGTTCACATACAATTGCGATAATCATACCTTCAACTACCTTGTTGAAGATGGCTTCGCATATTGTGTTGTCGCCGATGAATCTGTTGGAAGGCAAGTACCAATGGCATTTCTGGAGCGTGTTAAGGAGGATTTTAAGAGGAGATATGGTGGTGGAAGAGCTGACACAGCTGTTGCTAACAGCTTGAACAAGGATTTTGGGTCAAAATTGAAAGAGCACATGCAATATTGCATTGACCACCCTGAAGAGATCAGCAAACTTGCAAAAGTGAAGGCCCAGGTTTCTGAAGTGAAAGGTGTCATGATGGACAACATTGAAAAGGTTCTTGACCGTGGTGAGAAGATTGAACTTCTGGTTGATAAAACAGAAAACCTTCGTTTTCAGGCTCAGGACTTCCAAAAGAAGGGAACTGAGTTGCGCAGAAAGATGTGGTTTCAGAACATGAAAGTGAAATTGATTGTCCTCGGAATTGTGGTGGCCTTGATTCTCATAATTGTCCTTTCAATATGCCATGGATTCAATTGTTCGAAAAAATGA___TCTGGAATAGATAGAGGTCCATTTGAATTGGAACAACTTTTGATTGGTTATGGATGGCATTCTTGTTCTCTGTATTTCTCTCTATATTATCAGTTTCGGGTGAGATAGTTCTATGATGTTTGTCAGAGGGTATTTTGCTTGGACAATCACTGGTTGATAGTACATATTGACTAGTATGACAACGAAATGTTCTGAATATTCAGTGGGGCAGAGACTCTGATTGCGTACAGCAACTTTAGTGTATTATATCAAGGTCATGCATTTGTTATTGTTCTTATCTTTAACGAATTATTTTTTTACATCTTAAATTTGACCTTGCTAGCTTATGTTCAGAAAATATTCGATTTTGAGTGGTTGATAAATCCATTTTAACTTTGAAACAAGCATTTATGTAATTCTTTACATT

Fln Alignment:

Contig7922___MGQQSLIYSFVARGTVVLAEYTEFKGNFTSIAAQCLQKLPASNNKFTYNCDNHTFNYLVEDGFAYCVVADESVGRQVPMAFLERVKEDFKRRYGGGRADTAVANSLNKDFGSKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDKTENLRFQAQDFQKKGTELRRKMWFQNMKXXXXXXXXXXXXXXXXXXSICHGFNCSKK
A9NNA8_________________MGQQSLIYSFVARGTVVLAEYTEFKGNFTTIAAQCLQKLPASNNKFTYNCDNHTFNYLVEDGFAYCVVADESVGRQVPMAFLERVKEDFKRRYGGGRADTAVGNSLNRDFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRFQAQDFQKQGTQLRRKMWFQNMKVKLIVLGIVVALILIIVLSVCHGFNCSKK

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1362	12		87		0.992554
1364			87	12	0.992554
1365		14		85	0.993533
1416	25			75	0.996473
1417		25		75	0.996473
1418	25			75	0.996473
1458	66			33	0.997452
1459	66	33			0.997452
1461	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain