SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7919

Length: 2323 nt

UniGene Fasta

>biog3_v1.0_unigene7919
CCATGAAAATCTTTTTACCCTATACCCACTGCGTTTTGACCTTGTGAGCTGCATCTGGACAAAGCCTAGTTAAGCCCCCACCTGTGTGTTTTTGTAGTAGAGCGCAGAAGGGGAGCAACTCGAGTGTGTGTTTGTGGCATCTCCTCTGAGAAGTAGGGCTGTTTTTGGAATGAGCTGCTGTAATGAGCGTTTTCCTGAGGTTGAAGTGGGGTTTATGCGAGTAAGTGATTAGGCATTTGGCAGCGGTCAGGTATTTGGGTTATACTTACTCTCTCGTTGGAATTTTTAATGCTGCTTTTGGTAAGAAACAGCAGTTAGAAAGATAAAGGCTAAATGCCATTTTCTTTTCCATGGTTTTTGGTCATATTGGTGTAAGAGGGTGGAATCTGAAGTGTTGGTTTTGAGTTCTATAGTCGGCGCTTTTTGGAAATCCTCCTTAGGCGCAGGTTTGATCTCGTGATCTATATCAGGCAAGTTGCAAAAGCAAGCACAGGCACGTTGTGTTGGAGCGTTTTAGGAACGGCGGCGGGGGCTTGGATATCTATGCATGGAAGGGAGAGAAACAATGGGCTTGCCTCCGTCTTCTGGCATGACAGCAGGACTTGATTCATTTACTCCTGTTTCACAGAGAGGTCACGCGGGTGGCGCTCTGCACACGGGGATGGCGCCTGTAATGCGGCCTCATCCGACTTCCGGCGTTACGATTGCGTCGAATCCAAACAATTCTAGCTCTTCTCCATTCCACACAGATTCATCTACAGCCATTGTGTCGCATGGGATGAGTATGAGTATGCAGAAATTGGAACCAATGAAAAGGAAGCGAGGCAGGCCCAGGAAGTATGGGCCTGATGGGAACATGGCACTGGCTTTGGCTCCTCTCTCTTCCACACCAGGTCCATTTTCACCATCACAGAAACGGGGTAGAGGGCGGCCACCTGGCTCTGGCAAGAAACAGCGTTTGGCTGCACTTGGGGAATGGGTGGTAGGCTCAGCAGGTATTGGCTTCACTCCACACGTCATTACCATAGCAGCAGGGGAGGATGTTGCCTCAAAAATAATGTCATTTTCACAGCAAGGGCCTCGTGCAGTCTGCATTCTTTCAGCGAATGGTGCTATTTCAAATGTAACGCTTCGTCAGTCTGCCACATCTGGTGGCACTTTAACATATGAGGGACGCTTCGAAATTCTGTCTCTATCAGGCTCATTTATGCTCACAGAAAATGGTGGGCAACGTAGTAGAACTGGTGGTCTGAGTGTGTCTTTGGCAAGCCCTGATGGGCGTGTTGTTGGTGGAGGAGTTGCTGGGATGCTAATGGCAGCTAGTCCAGTGCAGGTTGTTGTGGGGAGCTTTATTTCAAATGGTCATAAAGATCCGCTAAACCTGCCAATTCAGAGCCTCCTTCCATAGGCTTGGCACAAGCTGCTGGATCTGGAGGTCCAGTTGCTATTCCAATTTCTCGGTCTCCTCTGAATGATACCTATGGAGGCCCAGGTAGTCCTCCATTGAATCAAAATTCTGGGGGTTCAACTATTAGTAATACTAATCAACAAACAATTCACAACATGACTTCTTTTCAGTCAATGGCTTGGACAGGCTCACAATCAATGAAAGAGGCGAGGCATAACACTGATATTAACATTTCTTTGCCCGGAGGATAACTGTACGTAGACTTGAATTCTTTTTTACAGAAAGATTTTGTTCCATTTCTCAGATTTAGCAGACTGACTACATGGGGCATTAGAACTGGTTGGGGTCAATACAAACATTTCCTTCTGATTGCTGCATACCTCTCCAAGCAAAAGTTGTGAACTGACTATATAACTAATAGTCTTCCAGAACAGATGCAAAAGCTGTTATTGCGGTGTCAACTATTTTGATGTAAGCTATGAAACTTGCTTCTACGTTTTCCATGCTATTGCCAGAACTATAAAAGGGACAATTAATTTATGCTCTTCGACACAGGCCATTTATGATGTGTGGCCTTTGCTTTCTGCAAATCCTAATTTGTATTGCTATTCAAGTGTGGATTTTAGTTTTATTTGTAACTCTTGAATTTGATCAGTCATTGATATTCAATGTACAAGAGTTGTTTTCTTGTTTTAGTGTATAAGTGATGTGTGGATGTTGTTCCATGAATGTTGGAGCAATTGCCAATGCAATGATTTGTGTCCCGGAGGGAATATATATCTAATTTATCCCAAAGTTCAAAGCATAAAGGCATATTTATCTGCACTTGGACACTGAAAGACTGGATGGATCAACTCTTATTGAAAAAAAATATATCCGCACGACATAATGTGTATTTCCATCCTTCAAGATTTG

Ace file of the UniGene biog3_v1.0_unigene7919

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1367	16/35
SustainPine v2.0	sp_v2.0_unigene25861	19/35

Source	Descriptions	Term	Type	Identity
AutoFact	putative AT-hook DNA-binding protein [Oryza sativa Japonica Group] gb\|EAZ07603.1\| hypothetical protein OsI_29854 [Oryza sativa Indica Group]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	dna binding	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor TFIIB	IPR000812	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Domain of unknown function DUF296	IPR005175	-	-
Sma3	Microtubule-associated protein, MAP65/ASE1-type	IPR007145	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA24

Fln msg: Separated hits, possible frame ERROR between 1375 and 1378, your sequence is longer than subject: 371 - 302

Fln protein: MEGRETMGLPPSSGMTAGLDSFTPVSQRGHAGGALHTGMAPVMRPHPTSGVTIASNPNNSSSSPFHTDSSTAIVSHGMSMSMQKLEPMKRKRGRPRKYGPDGNMALALAPLSSTPGPFSPSQKRGRGRPPGSGKKQRLAALGEWVVGSAGIGFTPHVITIAAGEDVASKIMSFSQQGPRAVCILSANGAISNVTLRQSATSGGTLTYEGRFEILSLSGSFMLTENGGQRSRTGGLSVSLASPDGRVVGGGVAGMLMAASPVQVVVGSFISNGHKDxxKPANSEPPSIGLAQAAGSGGPVAIPISRSPLNDTYGGPGSPPLNQNSGGSTISNTNQQTIHNMTSFQSMAWTGSQSMKEARHNTDINISLPGG*

Protein Length: 372

Fln nts: CCATGAAAATCTTTTTACCCTATACCCACTGCGTTTTGACCTTGTGAGCTGCATCTGGACAAAGCCTAGTTAAGCCCCCACCTGTGTGTTTTTGTAGTAGAGCGCAGAAGGGGAGCAACTCGAGTGTGTGTTTGTGGCATCTCCTCTGAGAAGTAGGGCTGTTTTTGGAATGAGCTGCTGTAATGAGCGTTTTCCTGAGGTTGAAGTGGGGTTTATGCGAGTAAGTGATTAGGCATTTGGCAGCGGTCAGGTATTTGGGTTATACTTACTCTCTCGTTGGAATTTTTAATGCTGCTTTTGGTAAGAAACAGCAGTTAGAAAGATAAAGGCTAAATGCCATTTTCTTTTCCATGGTTTTTGGTCATATTGGTGTAAGAGGGTGGAATCTGAAGTGTTGGTTTTGAGTTCTATAGTCGGCGCTTTTTGGAAATCCTCCTTAGGCGCAGGTTTGATCTCGTGATCTATATCAGGCAAGTTGCAAAAGCAAGCACAGGCACGTTGTGTTGGAGCGTTTTAGGAACGGCGGCGGGGGCTTGGATATCTATGC_-_ATGGAAGGGAGAGAAACAATGGGCTTGCCTCCGTCTTCTGGCATGACAGCAGGACTTGATTCATTTACTCCTGTTTCACAGAGAGGTCACGCGGGTGGCGCTCTGCACACGGGGATGGCGCCTGTAATGCGGCCTCATCCGACTTCCGGCGTTACGATTGCGTCGAATCCAAACAATTCTAGCTCTTCTCCATTCCACACAGATTCATCTACAGCCATTGTGTCGCATGGGATGAGTATGAGTATGCAGAAATTGGAACCAATGAAAAGGAAGCGAGGCAGGCCCAGGAAGTATGGGCCTGATGGGAACATGGCACTGGCTTTGGCTCCTCTCTCTTCCACACCAGGTCCATTTTCACCATCACAGAAACGGGGTAGAGGGCGGCCACCTGGCTCTGGCAAGAAACAGCGTTTGGCTGCACTTGGGGAATGGGTGGTAGGCTCAGCAGGTATTGGCTTCACTCCACACGTCATTACCATAGCAGCAGGGGAGGATGTTGCCTCAAAAATAATGTCATTTTCACAGCAAGGGCCTCGTGCAGTCTGCATTCTTTCAGCGAATGGTGCTATTTCAAATGTAACGCTTCGTCAGTCTGCCACATCTGGTGGCACTTTAACATATGAGGGACGCTTCGAAATTCTGTCTCTATCAGGCTCATTTATGCTCACAGAAAATGGTGGGCAACGTAGTAGAACTGGTGGTCTGAGTGTGTCTTTGGCAAGCCCTGATGGGCGTGTTGTTGGTGGAGGAGTTGCTGGGATGCTAATGGCAGCTAGTCCAGTGCAGGTTGTTGTGGGGAGCTTTATTTCAAATGGTCATAAAGATCCxxxTAAACCTGCCAATTCAGAGCCTCCTTCCATAGGCTTGGCACAAGCTGCTGGATCTGGAGGTCCAGTTGCTATTCCAATTTCTCGGTCTCCTCTGAATGATACCTATGGAGGCCCAGGTAGTCCTCCATTGAATCAAAATTCTGGGGGTTCAACTATTAGTAATACTAATCAACAAACAATTCACAACATGACTTCTTTTCAGTCAATGGCTTGGACAGGCTCACAATCAATGAAAGAGGCGAGGCATAACACTGATATTAACATTTCTTTGCCCGGAGGATAA___CTGTACGTAGACTTGAATTCTTTTTTACAGAAAGATTTTGTTCCATTTCTCAGATTTAGCAGACTGACTACATGGGGCATTAGAACTGGTTGGGGTCAATACAAACATTTCCTTCTGATTGCTGCATACCTCTCCAAGCAAAAGTTGTGAACTGACTATATAACTAATAGTCTTCCAGAACAGATGCAAAAGCTGTTATTGCGGTGTCAACTATTTTGATGTAAGCTATGAAACTTGCTTCTACGTTTTCCATGCTATTGCCAGAACTATAAAAGGGACAATTAATTTATGCTCTTCGACACAGGCCATTTATGATGTGTGGCCTTTGCTTTCTGCAAATCCTAATTTGTATTGCTATTCAAGTGTGGATTTTAGTTTTATTTGTAACTCTTGAATTTGATCAGTCATTGATATTCAATGTACAAGAGTTGTTTTCTTGTTTTAGTGTATAAGTGATGTGTGGATGTTGTTCCATGAATGTTGGAGCAATTGCCAATGCAATGATTTGTGTCCCGGAGGGAATATATATCTAATTTATCCCAAAGTTCAAAGCATAAAGGCATATTTATCTGCACTTGGACACTGAAAGACTGGATGGATCAACTCTTATTGAAAAAAAATATATCCGCACGACATAATGTGTATTTCCATCCTTCAAGATTTG

Fln Alignment:

Contig7919___NMALALAPLS-STPG-PFXXXXXXXXXXXXXXXXXXXLAALGEWVVGSAGIGFTPHVITIAAGEDVASKIMSFSQQGPRAVCILSANGAISNVTLRQSATSGGTLTYEGRFEILSLSGSFMLTENGGQRSRTGGLSVSLASPDXXXXXXXXXXMLMAASPVQVVVGSFISNGHKDPxKPANSEPPSIGLAQAAGSGGPVAIPISRSPLNDTYGGPGSPPLNQNSGGSTISNTNQQTIHNMTSFQSMAWTGSQSMKEARHNTDINISLPGG
D5AA24_________________SMALALAPLSASAPGAPFSPLQKRGRGRPPGSGKKQRLAALGEWVVGSAGIGFTPHVITIAAGEDVASKIMSFSQQGPRAVCILSANGAISNVTLRQPATSGGTLTYEGRFEILSLSGSFMLTENGGARSRTGGLSVSLASPDGRVVGGGVAGMLMAASPVQVVVGSFISNGQKDPxKPAKPEP-SIGLAQAAASGGPVAIPISRSPLNDTYGGPGSPPLNQNTGGSAISNTNQQAIHNMTSFQSMAWTGSQSMKEARHNTDINISLPGG

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
65		33	66		1.0
121		75	25		0.996473
122			75	25	0.996473
195		66		33	1.0
386	25			75	0.996473
387	25	75			0.996473
391	75			25	0.996473
517	11		88		0.923564
518		11	88		0.923564
520	88			11	0.923564
521		88		11	0.923564
634	25			75	0.996473
637		75		25	0.996473
638			75	25	0.996473
704		33	66		0.997452
1104	14		85		0.993533
1105		85		14	0.993533
1184	71	28			1.0
1282		25	75		0.996473
1291	25		75		0.996473
1306	33		66		0.997452
1310			66	33	0.997452
1482	20			80	0.995493
1483	80			20	0.995493
1484		80	20		0.995493
1485		80		20	0.995493
1919	33		66		0.997452
1968		80		20	0.995493
1969	80			20	0.995493
2020	25		75		0.996473
2065	25		75		0.996473
2068		75	25		0.996473
2069	75			25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain