SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7912

Length: 1460 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7912

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6730	220/230
SustainPine v2.0	sp_v2.0_unigene15695	8/230
SustainPine v2.0	sp_v2.0_unigene24354	2/230

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lactoylglutathione lyase / glyoxalase I-like protein [Arabidopsis thaliana] sp\|Q9LV66.1\|Y5848_ARATH RecName: Full=Uncharacterized protein At5g48480 dbj\|BAA96968.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL67055.1\| unknown protein [Arabidopsis	-	-	5.0e-11	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	glyoxalase bleomycin resistance protein dioxygenase	-	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ48

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 85 - 173

Fln protein: YEEAGAEVKSPVALKGTSVILHLETDDVDAAVKLAVDAGATVTEEVAERPWGQRYGKVKDPYGFVWSFATTIKESAVAEDDAQA*

Protein Length: 86

Fln nts: AATGTCACTTTCCTTTAATGAAATGTTTTGAGCAATTTTGCTTTTTTTTCGGTCATTGTTTTAGATTCTTCGAAATTCTTGACTGTAAAATCTATGTTCCAGAAGTTATTTCTGGTTATTTTCTTTTAATCAAATGTTTCAACTATGAGGACTTTCGGTTCTGGATGACGAGAGTTTCGGAAATGACTGAATGGCGCTTCGTAAGGAAGTTTTGAAGTCATTTCCATTGAGCTTTTGCCTCTGTAGTTGTATTCTGAATTTGAAAGCCGATTACCATTCGTGATTGTTGAAAACCTAGACGGCGGAATTTTTGCTTTTTGGTTTTTGCTTCTGCACTGGATAACTATAACGTTTTTCTTATATTCATCGAGTTAGGGGTTTTTGTTGAGCATAACGTTACTTGTGGGAAAGTTTTGCAATTCATACATATCAGGTAGCACTTGTATAGCATGACTTCGAATGGATTTTTGACTGTAGACTGTTCATTGTAGGTTTTCTTGAATTTAAGTTCAATTCTGATCGTTTAGTTTTGTTTTTCATGTTCCTGAAGCAGTAAATATCTGCCGGCAGCTGGTATTTGGTATATGTGGTTGTCATTGTATAAATTTAAGGGATTCTTGGTACTGTTCGATTTTTTATTCTAATTTGTATTTTAATTTAAAGGCTTGCTTTGAAATGGAGCTGTCTGTAACATTTAACAGTTCGAGAGGAGCTGTTGGCCGTAAAGCTGTTTGGTTGTTTCATAGTGGGGTTTCTGAGCTGATACGAAGAGGCCGGTGCAGAGGTGAAATCGCCGGTGGCCCTTAAGGGCACCTCAGTGATTCTCCATTTGGAGACGGACGACGTTGATGCGGCAGTTAAACTTGCGGTGGACGCCGGGGCAACTGTTACTGAAGAGGTTGCGGAACGTCCTTGGGGTCAACGATACGGAAAGGTGAAGGATCCCTATGGTTTTGTATGGAGTTTCGCTACTACCATTAAAGAGTCTGCCGTAGCCGAGGACGACGCGCAAGCTTAA___GCGTAGGCTTAACTTCTGCGTATTTTGCGTCTAACCTTTTTTCTTGACCCTTCTCCGTCTGAACTCGTAATTTGAAAGAATACGAGCGACGGAGTAAAGCTATACGGTTTAAATTTTGTAGGCATCTTGACTCTAAAGTTCAACGGAGGGTTTGTACATACGCCCTTCTTTGCTACTGTTACAGGTCTTTTTAGACGGATTGATGATAACTATTGTTTCAGACTTGTAATATTTGGAACTTCTTTAAAGATCAAGTTCGTTATCGCTGTCCGTCTTTAATCTGTTTCTGTGGGTGTTTTGACGAGTATTGCATGAATGCGAGATAGTCGTCGGGCCTCCTTCGAAAATTACTGTTGAATACTTGTTTCAATAGTAATCGATTATGGAACTTTATTGTTGTTTTTCTGCAAATGCGTTATCCTATATCTGGTGGTTTTACATT

Fln Alignment:

Contig7912___EEAGAEVKSPVALKGTSVILHLETXXXXXXXXXXXXXGATVTEEVAERPWGQRYGKVKDPYGFVWSFATTIKE
A9NQ48_________________EEAGADVKSPVALKGTSVILHLETDDVEVAFKRAVDAGATVTEEISERSWGQRYGKVKDPYGFVWSLATPIKE

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
608	12			87	0.992554
645		16		83	0.994512
646	16			83	0.994512
665	20			80	0.995493
666	80	20			0.995493
686	80	20			0.995493
689			80	20	0.995493
690			75	25	0.996473
775			33	66	0.997452
778		33		66	0.997452
783	33	66			0.997452
789	66	33			0.997452
790		33		66	0.997452
1180	3		90		0.997544
1185		6	93		0.999453
1213	2		97		0.967822
1223	1	1		86	1.0
1282	96	3			0.988113
1285	96			3	0.989722
1294	5		94		0.999996
1300	4		93	2	0.973796
1301	4	91		2	0.908347
1302	2	4		93	0.98137
1318		5	94		0.998578
1319	5			94	0.998578
1388	6		93		0.99903
1435	33			66	1.0
1436		33		55	1.0
1437	33			66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain