SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7902

Length: 350 nt

UniGene Fasta

>biog3_v1.0_unigene7902
AATGTCTCATCTTTGTCTTCATCAAGTGTATTTTCACCTCAAGATCAACCTGATCCATGGAGTCCTCACTGCAATAACAAAGAGTCATGTGAAATAAGGTTGACTGATCCTTTCCAAGTTAAGGGTCCGGGAGAAAGCATTGGAGCATATAATTCAATGATAGAGGTACCATGGATTTGTGTGGATAATGATAGGTTAAGTTATGCAGCTCGGATGCTACATAATTTCAAGTCTCTTGTTCGTCGATTGGAAAAGGTTGAACCTAAAAAGCTCAAACATGAAGAGAAGCTTGCTTTTTGGATCAATGTTTACAATGCTTTAATGATGCATGCTTATTTGGCATATGGAAT

Ace file of the UniGene biog3_v1.0_unigene7902

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4034	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Electron transporter, putative n=1 Tax=Ricinus communis RepID=B9S8S3_RICCO	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	uncharacterized protein	-	-	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF547	IPR006869	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LS42

Fln msg: Distance to subject end: 196 aas, your sequence is shorter than subject: 116 - 648

Fln protein: NVSSLSSSSVFSPQDQPDPWSPHCNNKESCEIRLTDPFQVKGPGESIGAYNSMIEVPWICVDNDRLSYAARMLHNFKSLVRRLEKVEPKKLKHEEKLAFWINVYNALMMHAYLAYG

Protein Length: 117

Fln nts: AATGTCTCATCTTTGTCTTCATCAAGTGTATTTTCACCTCAAGATCAACCTGATCCATGGAGTCCTCACTGCAATAACAAAGAGTCATGTGAAATAAGGTTGACTGATCCTTTCCAAGTTAAGGGTCCGGGAGAAAGCATTGGAGCATATAATTCAATGATAGAGGTACCATGGATTTGTGTGGATAATGATAGGTTAAGTTATGCAGCTCGGATGCTACATAATTTCAAGTCTCTTGTTCGTCGATTGGAAAAGGTTGAACCTAAAAAGCTCAAACATGAAGAGAAGCTTGCTTTTTGGATCAATGTTTACAATGCTTTAATGATGCATGCTTATTTGGCATATGGAAT

Fln Alignment:

Contig7902___DPWSPHCNNKESCEIRLTDPFQVKGPGESIGAYNSMIEVPWICVDNDRLSYAARMLHNFKSLVRRLEKVEPKKLKHEEKLAFWINVYNALMMHAYLAYG
B8LS42_________________DGWSPRRKTESVCEATLKNPFKIKGQSRNIGPYSSMVEVPWICADKDQLAYATSMLRTFRSMVEHLERIDPSQLQRESKLAFWINVHNALVMHAYLAYG

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
112	33			66	0.997452
113	33			66	0.997452
115		66	33		0.997452
116		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain