SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7870

Length: 403 nt

UniGene Fasta

>biog3_v1.0_unigene7870
AAGAAGGGTACTATTGCGTTCAGCAGAAGGAAGACGAGGATGGGCTTGTTGGGTATTCTCTAAGCAATTGTCTCATCGATTCTGCAACCGAGGCGCTGAAGAAAAACATAACGACACTGGCGCCCAAAGTTCTTCCCCTGTCTGAACAGCTCCTGTATGTGTACAGTATGCTGAAGGCGAGGCTCCAGGGCAAGGGTTCGAAACTCAGGACGCCCAATTTCAAGAAAGCCTTCCAGCATTTCTGCATTCATCCCGGTGGCCCTGTGATAATAGACGGTGTAGGGAAAAGCCTGGGACTGAGCGATTATGACGTGGAGCCTTCGAAGATGACGCTGCACAGATTTGGGAACACGTCAGCGAGTTGCCTGTGGTACGTGTTATCTTATATGGAGGCGAAGGGTCG

Ace file of the UniGene biog3_v1.0_unigene7870

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11329	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-CoA synthase n=1 Tax=Medicago truncatula RepID=Q2HTC9_MEDTR	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	fatty acid elongase	-	-	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Acyltransferases, Transferring groups other than amino-acyl groups.	EC:2.3.1.-	-	0.0	68%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid biosynthesis	00061	68%
Blast2go	Tetracycline biosynthesis	00253	68%
Blast2go	Lysine degradation	00310	68%
Blast2go	Arginine and proline metabolism	00330	68%
Blast2go	Histidine metabolism	00340	68%
Blast2go	Tyrosine metabolism	00350	68%
Blast2go	Benzoate degradation	00362	68%
Blast2go	Lipopolysaccharide biosynthesis	00540	68%
Blast2go	Glycerophospholipid metabolism	00564	68%
Blast2go	Ether lipid metabolism	00565	68%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	68%
Blast2go	Toluene degradation	00623	68%
Blast2go	Naphthalene degradation	00626	68%
Blast2go	Aminobenzoate degradation	00627	68%
Blast2go	Ethylbenzene degradation	00642	68%
Blast2go	Butanoate metabolism	00650	68%
Blast2go	Methane metabolism	00680	68%
Blast2go	Limonene and pinene degradation	00903	68%
Blast2go	Diterpenoid biosynthesis	00904	68%
Blast2go	Carotenoid biosynthesis	00906	68%
Blast2go	Anthocyanin biosynthesis	00942	68%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	68%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	68%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	68%
Blast2go	Betalain biosynthesis	00965	68%
Blast2go	Biosynthesis of unsaturated fatty acids	01040	68%
Blast2go	Biosynthesis of type II polyketide backbone	01056	68%
Blast2go	Biosynthesis of terpenoids and steroids	01062	68%
Blast2go	Metabolic pathways	01100	68%
Blast2go	Biosynthesis of secondary metabolites	01110	68%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	68%
Blast2go	transferase activity, transferring acyl groups other than amino-acyl groups	GO:0016747	Molecular Function	68%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Very-long-chain 3-ketoacyl-CoA synthase	IPR012392	-	-
Sma3	FAE1/Type III polyketide synthase-like protein	IPR013601	-	-
Sma3	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal	IPR013747	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	Ribosomal protein S10, conserved site	IPR018268	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A7W7

Fln msg: Distance to subject end: 66 aas, your sequence is shorter than subject: 133 - 305

Fln protein: EGYYCVQQKEDEDGLVGYSLSNCLIDSATEALKKNITTLAPKVLPLSEQLLYVYSMLKARLQGKGSKLRTPNFKKAFQHFCIHPGGPVIIDGVGKSLGLSDYDVEPSKMTLHRFGNTSASCLWYVLSYMEAKG

Protein Length: 134

Fln nts: AAGAAGGGTACTATTGCGTTCAGCAGAAGGAAGACGAGGATGGGCTTGTTGGGTATTCTCTAAGCAATTGTCTCATCGATTCTGCAACCGAGGCGCTGAAGAAAAACATAACGACACTGGCGCCCAAAGTTCTTCCCCTGTCTGAACAGCTCCTGTATGTGTACAGTATGCTGAAGGCGAGGCTCCAGGGCAAGGGTTCGAAACTCAGGACGCCCAATTTCAAGAAAGCCTTCCAGCATTTCTGCATTCATCCCGGTGGCCCTGTGATAATAGACGGTGTAGGGAAAAGCCTGGGACTGAGCGATTATGACGTGGAGCCTTCGAAGATGACGCTGCACAGATTTGGGAACACGTCAGCGAGTTGCCTGTGGTACGTGTTATCTTATATGGAGGCGAAGGGTCG

Fln Alignment:

Contig7870___EGYYCVQQKEDEDGLVGYSLSNCLIDSATEALKKNITTLAPKVLPLSEQLLYVYSMLKARLQGKGSKLRTPNFKKAFQHFCIHPGGPVIIDGVGKSLGLSDYDVEPSKMTLHRFGNTSASCLWYVLSYMEAK
D5A7W7_________________EAYGCVMSKEDAEGFYGIGLRQSLIEVAGNAVRKNMTTLGSKVLPITELLYYAYNVFCIKALKRNLKPYIPNFRLAFSHFCIHPGGRAVVNGVGKNLRLSDYDLEPSRMALHRFGNTSTSGLWYEVAYLEAK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
96	25		75		0.996473
97	25	75			0.996473
100	75			25	0.996473
372	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain