SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7853

Length: 1111 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7853

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10879	11/26
SustainPine v2.0	sp_v2.0_unigene26170	2/26
SustainPine v2.0	sp_v2.0_unigene27987	13/26

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0724 RNA-binding proteins (RRM domain)	-	-	4.0e-06	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	protein	-	-	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNG9

Fln msg: your sequence is shorter than subject: 238 - 288

Fln protein: CIPQPHRSPSFIFNGNGSFANNGRRKKNSFNQGKRRLNGRNIRAQQEDSVRRTVYVSDIDQQVTEEQLAALFINCGQVIDCRICGDPNSVLRFAFIEFADEQGARAALSLAGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCARTIYCTNIDKKVSQVEVRMFFESLCGEVSRLRLLGDHVHSTRIAFVEFVMAESAILALNCSGAIVGSLPIRVSPSKTPVRPRIPHPTMH*

Protein Length: 239

Fln nts: AATGTATTCCTCAGCCTCACAGGTCGCCTTCTTTTATTTTTAATGGCAATGGCAGCTTCGCTAATAACGGCAGGAGGAAGAAAAACAGCTTCAATCAGGGTAAAAGGAGGCTCAACGGTAGGAACATCAGAGCACAACAGGAGGACAGCGTTAGAAGAACGGTTTATGTTTCTGATATTGATCAGCAGGTGACAGAAGAGCAGCTTGCAGCACTGTTTATCAATTGCGGCCAGGTTATTGACTGTCGCATATGTGGTGATCCTAATTCAGTTCTTCGTTTTGCATTTATAGAATTTGCCGATGAGCAGGGTGCAAGAGCAGCTTTGAGCCTCGCGGGAACCATGTTGGGATATTATCCAGTCAGGGTCCTCCCTTCCAAAACCGCGATTCTTCCAGTAAATCCAACATTTCTTCCAAGGTCTGAGGATGAGCGCGAGATGTGCGCACGGACAATATATTGTACAAATATTGATAAAAAGGTTTCTCAAGTGGAAGTGAGAATGTTCTTTGAGTCACTTTGTGGTGAGGTTTCTCGCCTGAGACTGCTTGGAGATCATGTTCATTCCACTCGTATAGCATTTGTTGAATTTGTAATGGCTGAAAGTGCCATACTTGCATTGAACTGTAGTGGTGCAATTGTGGGATCTTTGCCTATAAGGGTAAGTCCATCAAAGACACCAGTGCGGCCCCGCATCCCCCATCCTACCATGCATTGA___AGAATTACTGGAAGCTACACTGCAATGCCTGTGAATCATATGCATTGTTCTTTGAGAGTTTGAGCAAAGGATATTTTGTGAGAAGTAATGGTGTTCTGGAGTAGCGGTTTTTTGATAGTTATCCAAAATACGAAGAGTAAAACTAGTTTTAGCTTGAAACATTAAGGTCTTTTAAGACCCAATTGCAGATGCAGTTAGATTCAAGCAAGGGTTTCTTCTGATAAGTACCCAAACTCAATGAGCATCTTATTTATCTGTTTATGGAGATTATGGAGATCAATTAGGTATCACTATATCTATTGCCCATGAGCATGCAAATGCGTTTCAAGATGAAATCTTAGAGGTGTTGTGTTCATTTATACAGACAGGAATATGTGCCAATAGAAATATACATT

Fln Alignment:

Contig7853___IPQPHRSPSFIFNGNGSFANNGRRKKNSFNQGKRRLNGRNIRAQQEDSVRRTVYVSDIDQQVTEEQLAALFINCGQVIDCRICGDPNSVLRFAFIEFADEQGARAALSLAGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCARTIYCTNIDKKVSQVEVRMFFESLCGEVSRLRLLGDHVHSTRIAFVEFVMAESAILALNCSGAIVGSLPIRVSPSKTPVRPRIPHPTMH
A9NNG9_________________IPQPHRSPSFIINGNGSFANNSRRKKNNFNQGKRRLNGRNIRAQQEDSVRRTVYVCDIDHQVTEEQLAALFINCGQVIDCRICGDPNSVLRFAFIEFADEQGARAALSLAGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCARTIYCTNIDKKVSQVEVRMFFESLCGEVSRLRLLGDHVHSTRIAFVEFVMAESAILALNCSGAIVGSLPIRVSPSKTPVRPRIPHPTMH

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
923	25	75			0.996473
924		25		25	0.995533
926	75			25	0.996473
927			75	25	0.996473
1009		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain