SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7833

Length: 907 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7833

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7028	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	Transporter, putative n=1 Tax=Ricinus communis RepID=B9SAF5_RICCO	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	protein	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	66%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Biopterin transport-related protein BT1	IPR004324	-	0.0	-
Sma3	Major facilitator superfamily	IPR011701	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PS73

Fln msg: Distance to subject end: 38 aas, your sequence is shorter than subject: 302 - 601

Fln protein: MYLNLLSRSFTDVSAEENLRDDEDWVKIQKEKPGDIVEESNKGMIDGISMNEEVHVSEDKHSLLKLHTAEATRRRKDTRISKGDEKFPEVQSDIIDSKGSTRKSWFVSVKSTIRTLIEAVRQPVISRPMLWFFLAQVTIPNISTVLFYYQTDFLHLDASFLGTARVVSWGGLMLGTFIYNRFLKRVQLRKIFLGTHIALSILNLIDNILVLRLNSSLGISDKAFVLSTSALADAVNQFKLMPFLVLSGRLCPPGIEGTLFALFMSINNFGSTVSSFFGAAVASVLNLSSNSFDNLAVGICNI

Protein Length: 303

Fln nts: AATGTATCTCAACCTTCTCAGCAGGTCATTTACTGATGTGTCAGCAGAAGAGAATTTGCGAGATGATGAAGACTGGGTTAAAATTCAGAAAGAAAAGCCTGGTGATATTGTTGAAGAAAGTAACAAGGGGATGATAGATGGCATATCGATGAATGAAGAAGTACATGTCTCTGAGGATAAGCACTCCTTACTTAAGTTGCATACAGCGGAAGCGACTCGGAGGAGGAAAGACACCCGCATAAGTAAAGGGGATGAGAAATTCCCTGAGGTTCAGTCAGACATTATTGATTCTAAAGGCTCTACAAGAAAAAGCTGGTTTGTTTCGGTGAAATCCACCATTAGAACTCTAATTGAGGCAGTGAGACAGCCAGTAATTTCGAGGCCAATGCTATGGTTCTTTCTAGCTCAGGTTACAATTCCGAACATCTCAACTGTTCTGTTCTATTATCAGACAGATTTTCTCCATTTAGATGCCTCTTTTTTGGGAACTGCACGTGTGGTCAGCTGGGGTGGATTAATGCTAGGAACATTCATCTACAACCGTTTTCTGAAACGTGTGCAGTTGAGAAAGATATTCTTAGGAACCCATATTGCTCTTTCCATTCTCAATCTTATAGACAACATCTTGGTGTTACGCTTGAACTCTTCACTCGGGATATCAGACAAAGCTTTTGTTCTATCCACATCTGCACTTGCAGATGCAGTAAATCAGTTTAAGTTGATGCCCTTTTTGGTATTATCTGGTAGGCTATGTCCACCAGGAATTGAAGGGACCTTATTTGCTCTTTTCATGTCCATAAATAACTTTGGGTCTACAGTAAGTTCATTCTTTGGAGCAGCTGTAGCTTCAGTCCTGAATCTTTCTTCAAATAGTTTTGACAACCTTGCTGTTGGAATATGTAACATT

Fln Alignment:

Contig7833___FVSVKSTIRTLIEAVRQPVISRPMLWFFLAQVTIPNISTVLFYYQTDFLHLDASFLGTARVVSWGGLMLGTFIYNRFLKRVQLRKIFLGTHIALSILNLIDNILVLRLNSSLGISDKAFVLSTSALADAVNQFKLMPFLVLSGRLCPPGIEGTLFALFMSINNFGSTVSSFFGAAVASVLNLSSNSFDNLA--VGICNI
C0PS73_________________FESAKRHILQLWGTVRQPNIFLPTLFIFLWQAT-PQSETAMFFFTTNKLGFGPEFLGRVRLVTSVASLFGVWLYNGLLKSVPLQKIFFWTTLVGAGLGMTQILLVTGVNRQLGISDEWFAIGDSLILTVLSQASFMPVLVLAAKLCPSGMEATLFATLMSISNGGSVTGGLIGAGLTKVLGVTKDNFTNLTLLLVLCNL

SNPs (tot: 6)

Position	A %	C %	T %	Probability
645		85	14	0.993533
646	14		85	0.993533
648	16		16	0.988813
650	16		83	0.994512
653		80	20	0.995493
655		66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain