SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7826

Length: 1511 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene7826 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16237	66/66

Source	Descriptions	Term	Type	Identity
AutoFact	[F] COG0167 Dihydroorotate dehydrogenase	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	dihydropyrimidine dehydrogenase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Dihydropyrimidine dehydrogenase (NADP(+)).	EC:1.3.1.2	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Pyrimidine metabolism	00240	89%
Blast2go	beta-Alanine metabolism	00410	89%
Blast2go	Pantothenate and CoA biosynthesis	00770	89%
Blast2go	Drug metabolism - other enzymes	00983	89%
Blast2go	Metabolic pathways	01100	89%

Source	GOs	Term	Type	Identity
Blast2go	uracil catabolic process	GO:0006212	Biological Process	89%
Blast2go	cellular response to nitrogen levels	GO:0043562	Biological Process	89%
Blast2go	dihydropyrimidine dehydrogenase (NADP+) activity	GO:0017113	Molecular Function	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Dihydroorotate dehydrogenase, class 1/ 2	IPR012135	-	-
Sma3	Dihydroorotate dehydrogenase domain	IPR005720	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRT6

Fln msg:

Fln protein: MPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDSSKVINVTPRYARLRAGPNGSAKGEVIGWENIELISDRPLETMLKEFKQLKKDYPDRILIASIMEEYDKAAWEELIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCALLEEVCGWVNEKATIPVWAKMTPNVTDIAEPARVALRAGSEGIAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVHPIALAKVMSIAQMMKSEFPDPTLSLSGIGGVENGGHAAEFILLGANTVQVCTGVMMHGYGLAKQLCSELKDFMVKHNFSSVEDFRGLSLQYFTTHTDLVRRQREAIEQRKAVRKGLASDKEWTGDGFVKETEAMVSN*

Protein Length: 369

Fln nts: AATGTCGGAGATCAAAACGGGGCCGGTCCTGATTTGAGCGTGTCCGTCAACGGCTTGCAC_-_ATGCCGAATCCCTTCGTGATTGGTTCAGGTCCTCCCGGAACGAATTATACCGTCATGAAACGGGCCTTCGACGAAGGATGGGGGGCTGTCATTGCCAAAACGGTGTCTTTGGATTCAAGTAAAGTGATCAATGTGACTCCACGCTATGCTCGTCTCCGAGCAGGTCCTAATGGATCAGCAAAAGGAGAAGTCATTGGCTGGGAAAATATTGAACTTATCAGTGACCGTCCACTTGAGACCATGTTGAAAGAATTCAAACAGTTGAAGAAAGACTATCCTGATAGGATTCTCATTGCTTCCATTATGGAGGAGTATGATAAAGCTGCTTGGGAGGAGCTTATAGAACGAGTAGAAGAAACTGGAGTTGATGCGCTTGAGATTAACTTCTCCTGTCCTCACGGGATGCCTGAGCGCAAGATGGGTGCTGCAGTCGGACAAGACTGTGCTTTATTGGAGGAGGTTTGTGGTTGGGTAAATGAGAAAGCAACAATCCCAGTTTGGGCAAAGATGACTCCAAACGTGACAGATATTGCTGAGCCAGCGAGAGTGGCATTGAGGGCAGGAAGTGAAGGAATTGCGGCTATTAACACAATTATGAGTGTAATGGGAATCAATCTTGACACATTACGGCCTGAACCTTGTGTGGAGGGTTATTCAACCCCGGGTGGATATTCTTCAAAAGCTGTGCATCCAATTGCTCTTGCAAAAGTAATGTCTATTGCACAGATGATGAAGTCCGAGTTTCCTGATCCAACGTTATCACTTTCTGGCATAGGAGGAGTTGAAAATGGAGGTCATGCTGCTGAGTTTATACTGCTTGGAGCAAACACTGTTCAGGTCTGCACTGGGGTCATGATGCATGGTTATGGACTTGCTAAACAACTCTGCTCTGAGCTCAAGGACTTTATGGTGAAGCATAATTTTTCATCTGTTGAAGATTTTCGTGGGCTATCTCTACAATATTTCACGACTCATACAGATTTGGTTCGCCGTCAGCGTGAAGCTATTGAGCAGAGGAAAGCTGTTCGAAAAGGTTTAGCATCTGATAAGGAGTGGACTGGGGATGGCTTTGTCAAAGAGACAGAAGCCATGGTTTCTAACTGA___TTATCAAATGAAACTTTTTGTTGGTTTGCATTTACGTAGATACTATTCAGATGTGAAACTCTCTTTTTATCTTAAAGATATATGATTAGCAATTGCTCAAAAGGTAAATAGTTCCATTGTACAAATGGACATTTACTCGAAACTGTCTAAATCTATGACCTTTGTAGCTGCCAGCGTAACGTTGCTTTGTGCTCATTTTCAGACTTTGTTGTCACTGTCAGTTATTTGGTTGCAAGTCTTTTACATTAATATATGTGCTTATGGTGACAACATACAGTGAATTCAGAGTTTCTTGATCCAACTGTACTCGGTGGAAATTCACTTGACTCCACAAATTTCTGAACATT

Fln Alignment:

Contig7826___MPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDSSKVINVTPRYARLRAGP-NGSAKGEVIGWENIELISDRPLETMLKEFKQLKKDYPDRILIASIMEEYDKAAWEELIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCALLEEVCGWVNEKATIPVWAKMTPNVTDIAEPARVALRAGSEGIAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVHPIALAKVMSIAQMMKSEFPDPTLSLSGIGGVENGGHAAEFILLGANTVQVCTGVMMHGYGLAKQLCSELKDFMVKHNFSSVEDFRGLSLQYFTTHTDLVRRQREAIEQRKAVRKGLASDKEWTGDGFVKETEAMVSN
A9NRT6_________________MPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDSSKVINVTPRYARLRAGGHNGSAKGEVIGWENIELISDRPLETMLKEFKQLKKEYPDRILIASVMEEYDRAAWQELIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCALLEEVCGWVNEKATVPVWAKMTPNVTDIAEPARVALRSGSEGIAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVHPIALAKVMSIAQMMKSEFPDPALSLSGIGGVENGGHAAEFILLGANTVQVCTGVMMHGYGHVKQLCSELKDFMVKHNFSSIEDFRGISLQYFTTHTDLVRRQQEAIQQRKAIRKGLASDKEWTGDGFVKETETMVSN

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
143	66			33	0.997452
252			75	25	0.996473
270			25	75	0.996473
335	33			66	0.997452
336	33			66	0.997452
338		66	33		0.997452
339	66			33	0.997452
476	20			80	0.995493
483		20		80	0.995493
499	16		83		0.994512
502	83		16		0.994512
503			83	16	0.994512
515		85		14	0.993533
589		85	14		0.993533
590		85		14	0.993533
638	11		77	11	0.968132
640	87		12		0.992554
687	87	12			0.992554
689			87	12	0.992554
774	16			83	0.994512
775		16	83		0.994512
777	83			16	0.994512
778			83	16	0.994512
933	25		75		0.996473
1246		16		83	0.999991
1247	16			83	0.999991
1254			90	10	0.90298
1255		90		10	0.90298
1263	11			88	0.923564
1264		11		88	0.923564
1265	12	87			0.992554
1267		87		12	0.992554
1471	33			66	0.997452
1474		66		33	0.997452
1475			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain