SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7813

Length: 461 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene7813
CATATAAATCACGTAGACATGTCTCTGTACTTGGCATTTGACTATGCGGAACATGATCTTTATGAGATTATCCGGCATCATCGGGAGAAGCTAAATCATCATAACATTAATCAATACACCGTTAAGTCACTACTCTGGCAATTATTGAATGGATTGAATTATCTTCACAGTAATTGGATTGTACATCGTGACTTAAAGCCATCTAATATCCTGGTGATGGGTGAAGGTGAAGAGCACGGGGTTGTGAAAATAGCTGATTTTGGGCTTGCCAGGATATACCAGGCTCCCTTAAAACCTTTATCTGATAATGGGGTGGTTGTTACTATATGGTATCGAGCACCGGAGTTACTCTTAGGGGCCAAACATTACACCAGTGCTGTTGATATGTGGGCTGTAGGATGTATTTTGCAGAACTGATAACACTGAAACCACTGTTTCAAGGTGTGGAGGTCAAAGCTTCA

Ace file of the UniGene biog3_v1.0_unigene7813 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene428	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	putative cyclin-dependent kinase E1 [Arabidopsis thaliana] dbj\|BAF00561.1\| cdc2-like protein kinase like protein [Arabidopsis thaliana]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	cyclin-dependent kinase e-1	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	[RNA-polymerase]-subunit kinase.	EC:2.7.11.23	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	80%
Blast2go	cell division	GO:0051301	Biological Process	80%
Blast2go	RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353	Molecular Function	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Remorin, C-terminal	IPR005516	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Hydroxymethylglutaryl-coenzyme A synthase, N-terminal	IPR013528	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSZ5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 138 aas, your sequence is shorter than subject: 139 - 875

Fln protein: HINHVDMSLYLAFDYAEHDLYEIIRHHREKLNHHNINQYTVKSLLWQLLNGLNYLHSNWIVHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCILQN*

Protein Length: 140

Fln nts: CATATAAATCACGTAGACATGTCTCTGTACTTGGCATTTGACTATGCGGAACATGATCTTTATGAGATTATCCGGCATCATCGGGAGAAGCTAAATCATCATAACATTAATCAATACACCGTTAAGTCACTACTCTGGCAATTATTGAATGGATTGAATTATCTTCACAGTAATTGGATTGTACATCGTGACTTAAAGCCATCTAATATCCTGGTGATGGGTGAAGGTGAAGAGCACGGGGTTGTGAAAATAGCTGATTTTGGGCTTGCCAGGATATACCAGGCTCCCTTAAAACCTTTATCTGATAATGGGGTGGTTGTTACTATATGGTATCGAGCACCGGAGTTACTCTTAGGGGCCAAACATTACACCAGTGCTGTTGATATGTGGGCTGTAGGATGTATTTTGCAGAACTGATAACACTGAAACCACTGTTTCAAGGTGTGGAGGTCAAAGCTTCA

Fln Alignment:

Contig7813___SLYLAFDYAEHDLYEIIRHHREKLNHHNINQYTVKSXXXXXXXXXXXLHSNWIVHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIL
C0PSZ5_________________SIFMVMEYMEHDLKGLMETMKQPFS-----QSEVKCLMLQLFEGVKYLHDNWVLHRDLKTSNLLLNNCGE----LKICDFGLARQYGSPLKPYTQ--MVVTLWYRAPELLLGAKQYSTAIDMWSLGCIM

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
361	25			75	0.996473
362		25		75	0.996473
365			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain