SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7779

Length: 1462 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7779

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9084	57/57

Source	Descriptions	Term	Type	Identity
AutoFact	homolog of nucleolar protein NOP56 [Arabidopsis thaliana] gb\|AAF02835.1\|AC009894_6 nucleolar protein [Arabidopsis thaliana] gb\|AAG40838.1\|AF302492_1 NOP56-like protein [Arabidopsis thaliana] gb\|AAK62596.1\| At1g56110/T6H22_9 [Arabidopsis thaliana] gb\|AAM26	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	nucleolar protein	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	89%
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	89%

Source	InterPros	Term	Type	Identity
Sma3	Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain	IPR002687	-	-
Sma3	NOP5, N-terminal	IPR012974	-	-
Sma3	NOSIC	IPR012976	-	-

Full-Lengther Next Prediction

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
88	20	40		40	1.0
89	16			16	0.988813
90	50		50		1.0
92	83		16		0.994512
112		33		66	1.0
154		33		66	0.997452
156	33	66			0.997452
163		33		66	0.997452
230	33	66			0.997452
232			33	66	0.997452
291	25	75			0.996473
295			75	25	0.996473
338	16	83			0.994512
341			16	83	0.994512
342	83			16	0.994512
618	66		33		0.997452
671	25		75		0.996473
672	66	33			0.997452
674			66	33	0.997452
675	25		50	25	0.995533
676	33	66			0.997452
678		66	33		0.997452
679	66			33	0.997452
703	25		75		0.996473
704		75		25	0.996473
705	75		25		0.996473
706			75	25	0.996473
751		20		80	0.995493
753		80		20	0.995493
754	80			20	0.995493
785	87			12	0.992554
872	12		87		0.992554
937		11		88	0.923564
939			88	11	0.923564
949		85		14	0.993533
954		16	83		0.994512
957			83	16	0.994512
1002	16		83		0.994512
1003	16		83		0.994512
1005		83	16		0.994512
1006	83			16	0.994512
1031	83		16		0.994512
1032	83			16	0.994512
1057	16			83	0.994512
1058		16		83	0.994512
1061	83			16	0.994512
1112	12		87		0.992554
1116			87	12	0.992554
1125	14	85			0.993533
1129	85			14	0.993533
1207			88	11	0.923564
1245	12		87		0.992554
1248		87		12	0.992554
1335	71	14			0.984337
1338	83			16	0.994512
1376		25		75	1.0
1406		16	83		0.994512
1408		83		16	0.994512
1409	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain