SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7764

Length: 241 nt

UniGene Fasta

>biog3_v1.0_unigene7764
CAGTTCCAGTTAATAGCACATTAGTGTCTGGATTTGTTGCTGCCCTTTTGGCATTTTTTATGGATGTTTCTCAACTAGCAGGCATGGTTAGTGTTGGTACACTTCTTGCATTTACAATTGTGGCCATCTCTATTCTTATACTGAGATATGTGCCACCAGATGATGTGCCTGTGTCACCTTCACTTCAGGAATCAGCAGAATTTGAGCCCTTACCACTGAGTTCTCAAGCAAGTAACACATT

Ace file of the UniGene biog3_v1.0_unigene7764

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1234	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Cationic amino acid transporter n=1 Tax=Populus trichocarpa RepID=B9IPU4_POPTR	-	-	59%
FL-Next	tr=Cationic amino acid transporter; subsp. trichocarpa).	-	-	74%
Blast2go	cationic amino acid transporter	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	70%
Blast2go	amino acid transport	GO:0006865	Biological Process	70%
Blast2go	membrane	GO:0016020	Cellular Component	70%
Blast2go	mitochondrion	GO:0005739	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3	Amino acid permease domain	IPR004841	-	-
Sma3	Cationic amino acid transporter	IPR015606	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9IPU4

Fln msg: Distance to subject end: 187 aas, your sequence is shorter than subject: 79 - 641

Fln protein: VPVNSTLVSGFVAALLAFFMDVSQLAGMVSVGTLLAFTIVAISILILRYVPPDDVPVSPSLQESAEFEPLPLSSQASNT

Protein Length: 80

Fln nts: CAGTTCCAGTTAATAGCACATTAGTGTCTGGATTTGTTGCTGCCCTTTTGGCATTTTTTATGGATGTTTCTCAACTAGCAGGCATGGTTAGTGTTGGTACACTTCTTGCATTTACAATTGTGGCCATCTCTATTCTTATACTGAGATATGTGCCACCAGATGATGTGCCTGTGTCACCTTCACTTCAGGAATCAGCAGAATTTGAGCCCTTACCACTGAGTTCTCAAGCAAGTAACACATT

Fln Alignment:

Contig7764___VPVNSTLVSGFVAALLAFFMDVSQLAGMVSVGTLLAFTIVAISILILRYXXXXXXXXXXXLQESAEFEPLPLSSQ
B9IPU4_________________VPVKSTLVTGFGAAVLSFFMDVSQLAGMVSVGTLLAFTMVAISVLILRYVPPDEVPFPSSLQETIDSVSLRYSSQ

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
166		20		80	0.995493
167	20		80		0.995493
169			80	20	0.995493
203	25			75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain