SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7755

Length: 960 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene7755 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2583	6/11
SustainPine v2.0	sp_v2.0_unigene21556	5/11

Source	Descriptions	Term	Type	Identity
AutoFact	Protein-L-isoaspartate O-methyltransferase n=1 Tax=Picea sitchensis RepID=D5ADW3_PICSI	-	-	90%
FL-Next	sp=Protein-L-isoaspartate O-methyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-L-isoaspartate(D-aspartate) O-methyltransferase.	EC:2.1.1.77	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	protein modification process	GO:0006464	Biological Process	81%
Blast2go	methylation	GO:0032259	Biological Process	81%
Blast2go	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	GO:0004719	Molecular Function	81%
Blast2go	plastid	GO:0009536	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	IPR000682	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADW3

Fln msg: W1: There is no M at the beginning,

Fln protein: SSFRPSFRSKNGAFWSRSWADNSSLVEHLQQYGVIKSSRVADVMQKIDRGLFVPKGNPPYLDTPMAIGYNATISAPHMHATCLELLKEHLQPGMRALDIGSGTGYLTACFAMMVGPQGHAVGVDHIPELVAMSIENVNKSKAALLLPDGSLSLYAGDGRLGWPDLAPYDAIHVGAAAPEVPKPLIEQLKPGGRMVIPVGDFFQDLQVIDKQLDGSLKVHSETSVRYVPLTSTQEQLYGH*

Protein Length: 241

Fln nts: GGAATGCTGGCGTCGTCTGGGTTGCGTTCTCTGCCATGTTATTTCTGCACTCACCGACTGCGATTGCCGACTTTTCCTAACCCTAAAGTTCGCTTACGGCGCACTGTATTCGCTGCAAATATAGGCAATAATCTTCATTTCGACCTTCCTTTCGTTCAAAGAATGGAGCATTTTGGAGCAGAAGTTGGGCTGATAATAGTTCACTTGTAGAACATCTGCAGCAATATGGAGTTATTAAATCCAGTAGAGTAGCAGATGTCATGCAAAAGATTGACAGGGGATTGTTTGTGCCCAAAGGGAACCCTCCATATTTAGATACACCCATGGCAATAGGATATAATGCGACTATCTCCGCACCGCATATGCATGCCACCTGTCTTGAACTGTTGAAGGAACATTTGCAGCCAGGAATGCGTGCATTGGACATTGGGTCAGGCACTGGTTACTTGACTGCCTGTTTTGCAATGATGGTTGGTCCCCAGGGTCATGCTGTTGGTGTGGATCACATTCCGGAGTTGGTTGCAATGTCAATAGAGAATGTCAACAAAAGTAAAGCGGCACTTCTATTGCCAGATGGAAGCTTGTCCTTGTATGCTGGAGATGGTCGACTAGGTTGGCCAGATCTGGCTCCTTATGATGCTATTCATGTTGGTGCTGCTGCGCCAGAAGTTCCAAAGCCACTTATTGAACAATTAAAGCCTGGGGGACGGATGGTCATTCCTGTTGGTGACTTCTTTCAAGATTTGCAAGTCATTGACAAGCAGCTTGATGGATCTTTAAAGGTTCATAGTGAGACATCAGTTCGTTATGTTCCTTTGACCAGTACACAAGAGCAATTGTATGGTCATTAA___TCATGATTGGTGCTGCCTTATGCTAGGAGTAAATGGTTTCAGTGATTAGTCTGTGACTCTGTGTATGTGTGAGCAGAGATAAGATGCTTTCAACTTCTCTGCAGACATT

Fln Alignment:

Contig7755___FWSRSWADNSSLVEHLQQYGVIKSSRVADVMQKIDRGLFVPKGNPPYLDTPMAIGYNATISAPHMHATCLELLKEHLQPGMRALDIGSGTGYLTACFAMMVGPQGHAVGVDHIPELVAMSIENVNKSKAALLLPDGSLSLYAGDGRLGWPDLAPYDAIHVGAAAPEVPKPLIEQLKPGGRMVIPVGDFFQDLQVIDKQLDGSLKVHSETSVRYVPLTSTQEQLYGH
D5ADW3_________________FWSRGWADNSSLVGHLQQYGVIKSSRVADVMQKIDRGLFVPEGNSPYLDTPMAIGYNATISAPHMHATCLELLKEHLQPGMRALDIGSGTGYLTACFAMMVAPQGRAVGVDHIPELVTVSIENVKKSEAALLLADGNLSLHVGDGRLGWPDLAPYDAIHVGAAAPEVPKPLIEQLKPGGRMVIPVGDFFQDLQVIDKQLDGSLKVHSETSVRYVPLTSSQEQLHGH

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
108	33		66		0.997452
431	12			87	0.992554
435		87		12	0.992554
610	20		80		0.995493
612			80	20	0.995493
613	80		20		0.995493
619	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain