SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7741

Length: 326 nt

UniGene Fasta

>biog3_v1.0_unigene7741
TGGCGATTTCGAGAAAATGGACGAAGTTTATGATGTGATTGATGTAAAGAAAAAGAATTGAAGGAGAAGCTTGACTTGGACAAAGAAAGGAAAGACCGCGCAACAGATGAAATGACTGAGGAAGCTGATGAGTTCCGTGCACTTTTTTGAGCTCTAAACTCATACCTATCAAAGAATGCTTAATTCATAGTGACAAGGTTCATTCAAGCAAAGTGAATAGAAACCTAAAAATAATATCACGAATTCATTTAACATGGAATAGTGACTAATTTATTCAATGATTACTTCCATATTTCAAATTTCTCAAGTCATAGAAATTCTACATT

Ace file of the UniGene biog3_v1.0_unigene7741

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22681	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	diadenosine tetraphosphate hydrolase [Hyacinthus orientalis]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	bis(5 -adenosyl)-triphosphatase-like	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenylylsulfatase.	EC:3.6.2.1	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Sulfur metabolism	00920		0.0	83%
Blast2go	Metabolic pathways	01100		0.0	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	adenylylsulfatase activity	GO:0047627	Molecular Function	0.0	83%
Blast2go	adenosine 5'-monophosphoramidase activity	GO:0043530	Molecular Function	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Histidine triad motif	IPR011151	-	-
Sma3	Histidine triad (HIT) protein	IPR001310	-	-
Sma3	Ribulose bisphosphate carboxylase, large subunit, C-terminal	IPR000685	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPG1

Fln msg: Overlapping hits, possible frame ERROR between 109 and 103, your sequence is shorter than subject: 50 - 162

Fln protein: GDFEKMDEVYDVIDVKKKN*RRSLTWTKKGKTAxxxxMTEEADEFRALF*

Protein Length: 51

Fln nts: TGGCGATTTCGAGAAAATGGACGAAGTTTATGATGTGATTGATGTAAAGAAAAAGAATTGAAGGAGAAGCTTGACTTGGACAAAGAAAGGAAAGACCGCGxxxxxxxxxxxxATGACTGAGGAAGCTGATGAGTTCCGTGCACTTTTTTGAGCTCTAAACTCATACCTATCAAAGAATGCTTAATTCATAGTGACAAGGTTCATTCAAGCAAAGTGAATAGAAACCTAAAAATAATATCACGAATTCATTTAACATGGAATAGTGACTAATTTATTCAATGATTACTTCCATATTTCAAATTTCTCAAGTCATAGAAATTCTACATT

Fln Alignment:

Contig7741___GDFEKMDEVYDVIDVKKKN*RRSLTWTK--KGKTxxxxTEEADEFRALF
A9NPG1_________________GDFEKNDEVYDVIDIKEKELKEKLDLDKERKDRTxxxxAEEADEFRALF

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
258	25		75		0.996473
259		25	75		0.996473
261	75			25	0.996473
316	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain