SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7739

Length: 421 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene7739
AGTAATTCATGCAGCTGGAGGAATGCACATGATTGATCCACTTTTTCAACGGGTGCTTGTTAAAGAATGCCAAAGGCGAGGAATGCCTGTAATATTTGACGAAGTCTTTACTGGTTTCTGGCGTCTTGGAGCTGAGTCTGCTGCAGAGCTCCTTGGTTGTATGCCAGATATTGCATGTTATGCCAAATTGTTGACTGGTGGAGTTGTTCCGTTAGCTGCCACATTGGCAACAAATTCTGTCTTTGAGGCATTTGAAGGAAAATCCAAACTTTTTGCTCTTCTACATGGACACTCCTATTCTGGGTATGCAGTTGGATGTGCAGCAGCTGTCAAAGCAATGCAATGGTTTAAAGACCCACAACTGAATTTAAATATTAGTTCAAATGGGAACAGATTGATAGAGTTATGGGATAACAAACTT

Ace file of the UniGene biog3_v1.0_unigene7739 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14577	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	adenosylmethionine-8-amino-7-oxononanoate aminotransferase-like protein [Arabidopsis thaliana] gb\|ABN80998.1\| DAPA aminotransferase [Arabidopsis thaliana] gb\|ABU50829.1\| dethiobiotin synthetase [Arabidopsis thaliana]	-	-	66%
FL-Next	tr=Ornithine aminotransferase; Pinus sylvestris (Scots pine).	-	-	29%
Blast2go	adenosylmethionine-8-amino-7-oxononanoate aminotransferase-like protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosylmethionine--8-amino-7-oxononanoate transaminase.	EC:2.6.1.62	-	0.0	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Biotin metabolism	00780		0.0	78%
Blast2go	Metabolic pathways	01100		0.0	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	biotin biosynthetic process	GO:0009102	Biological Process	0.0	78%
Blast2go	adenosylmethionine-8-amino-7-oxononanoate transaminase activity	GO:0004015	Molecular Function	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminotransferase class-III	IPR005814	-	0.0	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q1RPP3

Fln msg: Distance to subject end: 107 aas, your sequence is shorter than subject: 140 - 468

Fln protein: VIHAAGGMHMIDPLFQRVLVKECQRRGMPVIFDEVFTGFWRLGAESAAELLGCMPDIACYAKLLTGGVVPLAATLATNSVFEAFEGKSKLFALLHGHSYSGYAVGCAAAVKAMQWFKDPQLNLNISSNGNRLIELWDNKL

Protein Length: 141

Fln nts: AGTAATTCATGCAGCTGGAGGAATGCACATGATTGATCCACTTTTTCAACGGGTGCTTGTTAAAGAATGCCAAAGGCGAGGAATGCCTGTAATATTTGACGAAGTCTTTACTGGTTTCTGGCGTCTTGGAGCTGAGTCTGCTGCAGAGCTCCTTGGTTGTATGCCAGATATTGCATGTTATGCCAAATTGTTGACTGGTGGAGTTGTTCCGTTAGCTGCCACATTGGCAACAAATTCTGTCTTTGAGGCATTTGAAGGAAAATCCAAACTTTTTGCTCTTCTACATGGACACTCCTATTCTGGGTATGCAGTTGGATGTGCAGCAGCTGTCAAAGCAATGCAATGGTTTAAAGACCCACAACTGAATTTAAATATTAGTTCAAATGGGAACAGATTGATAGAGTTATGGGATAACAAACTT

Fln Alignment:

Contig7739___CQRRGMPVIFDEVFTGFWRLGAESAAELLGCMPDIACYAKLLTGGVVPLAATLATNSVFEAFEGKSKLFALLHGHSYSGYAVGCAAAVKAMQWFKDPQL
Q1RPP3_________________CSKYNVLMIADEIQTGIGRTGKLLACEWESVRPDVVILGKALGGGVLPVSAVLADKDIMLCFKPGE------HGSTFGGNPLASAVAIAALEIVEEEKL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain