SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7730

Length: 2230 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene7730
CCGTAAGAAATCAATCGAGGGTTTGTATGGCAGCAGAAACAGTAATCCTGATGCCATTTTCATGACCCAGAAGTCATTAAATACAGAAGTCTGGAAATTGCAAAGGTATTTGCGGAATCGGAAGAAAAGGGAGAGATAGATGGGTTCCAGGCAGGGGTCCTCGGATGAAGACCAGGGAGCTCCAGATTCGTGGGAGCTGGAGGATTTGGATGACAGCATGAGGAGATTGATGGTCTCCTCCTCCAAGGTTTCCGAAAACCAATGTGATGTTCGCTCTGAGACGTCTGCAGGGCCGACTGCAGTCGCTTCTTCTTCCACCGAGAACGAAGACCTTCTGGCGGAACGCATAAACCAGGTCGATCAGTTCCTCCGAGAGGCTATTCAGAATCCTCGGGAGCGCTTGTCTGTTTTAAGAATTGAACAGGATGTTGTAAAGTTTCTTCAAAATCCTAGGCAGCAGCAACTTGAATTTTCCCAATTACCTACCTCCTACCTTAGGCTTGCAGCACATCGTATTGCTCAACATTATTGCCTGCAGTCAATGGTGGTTCTTGACAATAATTCATTAGATGGAACTGGGATGAAGATTATTATACACAAGACTTCTGACTCTAGGTTCCCCGCCATTCGCCTAGCTGATATTCCAGCAAATCTACCACAGGATGAAAAGAATAATATTGTCAAAGTTGCAATTAAACAGAGGCCACAAAAAGGTTCTCACGGTTCTGCTGGAGGCATGAATTCAAATTCTTCTAATCTGAACCATGCCAAGAGTGTCGAGGAAAGAAAAGAGGAGTATAATAAAGCTCGAGCACGAATATTCAGTGTTAATAACAGTACAACCTCAGGGAGTAAATCTACTGAAGATGAAGCTGTTGCATTTGATAATTGTCAGTTCCATACCTTAGTCAATTTGAAGCCTGAGGAGAAGCCTTGTGTGGATGTCGTACGGACTAACAGTGCTAAACCATTGTCTGATGGGTTATCTGGAATTGGTAGGATCAACAAACCTAAAGGAGAGAGGGAAGCTAACAAGGTAAAGAATAACAGGGTTGCAATTTTCCGGGATCGAGAGATAGATCGCAAGGATCCTGATTATGACCGCAGTTATGATAGGTATTCTCAGAGATTTGATCCTGGATTTGGCTTTAATATGGGACCATATAGCATGCAGGCTATGTATGCTCCTGCGGTTAATTATAACACAGAATTTCCCCAGCTTGGTGCAGCTCATAGGGTTCAGATGCATATGGAACCTCCACCTCGGACAATTCCACAACATGTTCGTGGTCCTTGGGTAGCTTCAACGAGTACAATGGGTTATGGCCATCTAGATACCATGATGGGGCCATTCAATCCAAATCACATGGGTGCACCTTCTGCATCTGCGATGTATATGCATTCTTCACAGTTTGCCTGCCCGGGTCCCACAATGACCTATGTTCGTCCTCAAGAACGCATTCAACAGTCTCTTTCACACCCTTCCCTTCAGCAGCAGCCTGAAGCATGTTTTGGACAAGCCCGGCCCCGCTAAGGGGCACGGGCAATGCCTGCACCTGCCAGCCAAGCATAGAGATAGTCAACTTTCCTTTAGTTGGTACTGTTATTCTATGTGTAGAATACATGAATTTTGTTGAGTGGCTGGCAGGGAAAATGCAGGCACACACTGAGGATGGCTGGAGTATGCTTTCAAACCAGATCTGGGCTTACTGTACTGTGTATTATAGTATACCAGAATATCTGAAACTATTCCGTCATCTTCAGTTCCTGTTGTAGCTCCGACATCTATATATGGGGGTTAAAATGACATTAATGGATGTCGACTGTGGGGTGTGTAGAATGCATATAGGCATTGATACACTCCATGGTGGGAGGGTCTTGTCCATAGAAGCTTGTAAAATAGATGCTTCTTTAAAATCCCGCGTGATACACCTGAAGGACTTCATGATGTATAACATTTGCTTTTACCAGAACCAAGAACAATTTTGCACTGAAGGGTAGATCAGCCCAACATGTCGAGAGGTGATTTCAAGATTAATTCATCTTGTTTGTCAGTTGTTTGGCACAAATGTGAAAGCTATAGTGCAATCCCCTGTATTCTTGAAAGGGTTATAACGGAAGATAGCATTTTGCTCAGATTGTAGACAGTCTGCATGATTTGTCAATACTACTATTTCGCATTATTTGTCAATACTACTAATCCTTGTACTCATCTAGACTATTTAATATT

Ace file of the UniGene biog3_v1.0_unigene7730 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22259	46/47

Source	Descriptions	Term	Type	Identity
AutoFact	R3h domain containing protein, putative n=1 Tax=Ricinus communis RepID=B9SG72_RICCO	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	r3h domain containing	-	-	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUZ4

Fln msg: your sequence is longer than subject: 465 - 376

Fln protein: MGSRQGSSDEDQGAPDSWELEDLDDSMRRLMVSSSKVSENQCDVRSETSAGPTAVASSSTENEDLLAERINQVDQFLREAIQNPRERLSVLRIEQDVVKFLQNPRQQQLEFSQLPTSYLRLAAHRIAQHYCLQSMVVLDNNSLDGTGMKIIIHKTSDSRFPAIRLADIPANLPQDEKNNIVKVAIKQRPQKGSHGSAGGMNSNSSNLNHAKSVEERKEEYNKARARIFSVNNSTTSGSKSTEDEAVAFDNCQFHTLVNLKPEEKPCVDVVRTNSAKPLSDGLSGIGRINKPKGEREANKVKNNRVAIFRDREIDRKDPDYDRSYDRYSQRFDPGFGFNMGPYSMQAMYAPAVNYNTEFPQLGAAHRVQMHMEPPPRTIPQHVRGPWVASTSTMGYGHLDTMMGPFNPNHMGAPSASAMYMHSSQFACPGPTMTYVRPQERIQQSLSHPSLQQQPEACFGQARPR*

Protein Length: 466

Fln nts: CCGTAAGAAATCAATCGAGGGTTTGTATGGCAGCAGAAACAGTAATCCTGATGCCATTTTCATGACCCAGAAGTCATTAAATACAGAAGTCTGGAAATTGCAAAGGTATTTGCGGAATCGGAAGAAAAGGGAGAGATAG_-_ATGGGTTCCAGGCAGGGGTCCTCGGATGAAGACCAGGGAGCTCCAGATTCGTGGGAGCTGGAGGATTTGGATGACAGCATGAGGAGATTGATGGTCTCCTCCTCCAAGGTTTCCGAAAACCAATGTGATGTTCGCTCTGAGACGTCTGCAGGGCCGACTGCAGTCGCTTCTTCTTCCACCGAGAACGAAGACCTTCTGGCGGAACGCATAAACCAGGTCGATCAGTTCCTCCGAGAGGCTATTCAGAATCCTCGGGAGCGCTTGTCTGTTTTAAGAATTGAACAGGATGTTGTAAAGTTTCTTCAAAATCCTAGGCAGCAGCAACTTGAATTTTCCCAATTACCTACCTCCTACCTTAGGCTTGCAGCACATCGTATTGCTCAACATTATTGCCTGCAGTCAATGGTGGTTCTTGACAATAATTCATTAGATGGAACTGGGATGAAGATTATTATACACAAGACTTCTGACTCTAGGTTCCCCGCCATTCGCCTAGCTGATATTCCAGCAAATCTACCACAGGATGAAAAGAATAATATTGTCAAAGTTGCAATTAAACAGAGGCCACAAAAAGGTTCTCACGGTTCTGCTGGAGGCATGAATTCAAATTCTTCTAATCTGAACCATGCCAAGAGTGTCGAGGAAAGAAAAGAGGAGTATAATAAAGCTCGAGCACGAATATTCAGTGTTAATAACAGTACAACCTCAGGGAGTAAATCTACTGAAGATGAAGCTGTTGCATTTGATAATTGTCAGTTCCATACCTTAGTCAATTTGAAGCCTGAGGAGAAGCCTTGTGTGGATGTCGTACGGACTAACAGTGCTAAACCATTGTCTGATGGGTTATCTGGAATTGGTAGGATCAACAAACCTAAAGGAGAGAGGGAAGCTAACAAGGTAAAGAATAACAGGGTTGCAATTTTCCGGGATCGAGAGATAGATCGCAAGGATCCTGATTATGACCGCAGTTATGATAGGTATTCTCAGAGATTTGATCCTGGATTTGGCTTTAATATGGGACCATATAGCATGCAGGCTATGTATGCTCCTGCGGTTAATTATAACACAGAATTTCCCCAGCTTGGTGCAGCTCATAGGGTTCAGATGCATATGGAACCTCCACCTCGGACAATTCCACAACATGTTCGTGGTCCTTGGGTAGCTTCAACGAGTACAATGGGTTATGGCCATCTAGATACCATGATGGGGCCATTCAATCCAAATCACATGGGTGCACCTTCTGCATCTGCGATGTATATGCATTCTTCACAGTTTGCCTGCCCGGGTCCCACAATGACCTATGTTCGTCCTCAAGAACGCATTCAACAGTCTCTTTCACACCCTTCCCTTCAGCAGCAGCCTGAAGCATGTTTTGGACAAGCCCGGCCCCGCTAA___GGGGCACGGGCAATGCCTGCACCTGCCAGCCAAGCATAGAGATAGTCAACTTTCCTTTAGTTGGTACTGTTATTCTATGTGTAGAATACATGAATTTTGTTGAGTGGCTGGCAGGGAAAATGCAGGCACACACTGAGGATGGCTGGAGTATGCTTTCAAACCAGATCTGGGCTTACTGTACTGTGTATTATAGTATACCAGAATATCTGAAACTATTCCGTCATCTTCAGTTCCTGTTGTAGCTCCGACATCTATATATGGGGGTTAAAATGACATTAATGGATGTCGACTGTGGGGTGTGTAGAATGCATATAGGCATTGATACACTCCATGGTGGGAGGGTCTTGTCCATAGAAGCTTGTAAAATAGATGCTTCTTTAAAATCCCGCGTGATACACCTGAAGGACTTCATGATGTATAACATTTGCTTTTACCAGAACCAAGAACAATTTTGCACTGAAGGGTAGATCAGCCCAACATGTCGAGAGGTGATTTCAAGATTAATTCATCTTGTTTGTCAGTTGTTTGGCACAAATGTGAAAGCTATAGTGCAATCCCCTGTATTCTTGAAAGGGTTATAACGGAAGATAGCATTTTGCTCAGATTGTAGACAGTCTGCATGATTTGTCAATACTACTATTTCGCATTATTTGTCAATACTACTAATCCTTGTACTCATCTAGACTATTTAATATT

Fln Alignment:

Contig7730___IEQDVVKFLQNPRQQQLEFSQLPTSYLRLAAHRIAQHYCLQSMVVLDNNSLDGTGMKIIIHKTSDSRFPAIRLADIPANLPQDEKNNIVKVAIKQRPQKXXXXXXXXXXXXXXXXNHAKSVEERKEEYNKARARIFSVNNSTTSGSKSTEDEAVAFDNCQFHTLVNLKPEEKPCVDVVRTNSAKPLSDGLSGIGRINKPKGEREAN---KVKNNRVAIFRDREIXXXXXXXXXXXXXXXXXXDPGFGFNMGPYSMQAMYAPAVNYNTEFPQLGAAHRVQMHMEPPPRTIPQHVRGPW-VASTSTMGYGHLDTMMGPFNPNHMGAPSASAMYMHSSQFACPGPTMTYVRPQERIXXXXXXXXXXXXPEACFGQ
A9NUZ4_________________MEQQVEKFIQNPSQQQLDFEQLPTSYLRLVAHRVAQHYGLQSMVVIDCHSADGSGSRIIARKTSQSGYPVIRLADIPVNLPQDERTNVVKFEIMQRAQKGSQVGGRGGLNNSSKSNFAKSVEERKEEYIKARARIFNSSSSADFIGTSVEDELASFDDEQCYSIRISSPEGKLTTDPLHNNDAKALMDCSSGLGGTNNLNGQMECSGRVNSNNSRVAIFRDREKDRKDPDYDRSYDRYNQRFDPGFGLNLGPFNMQALYTPLVNYNTEFPQLGTPHRAQIHMEPPPPPVPPHVHGTWGLAPPNTMGYGPPDAMVRPFHPGHMGAHSSPAMYLQSSQFACPGPAMSYIHLHEQFQQPLARPYLQQQPESSFGQ

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
608	85			14	0.993533
609	87		12		0.992554
627	10			90	0.90298
628	90			10	0.90298
630	90			10	0.90298
649			90	10	0.90298
652	90			10	0.90298
669	10		90		0.90298
780		85		14	0.993533
839		80		20	0.995493
848		80		20	0.995493
874	20		80		0.995493
877			20	80	0.995493
890	20	80			0.995493
891	20	80			0.995493
892		80		20	0.995493
893		80	20		0.995493
894	80			20	0.995493
1067	12	87			0.992554
1071		87		12	0.992554
1144	14	85			0.993533
1146			85	14	0.993533
1202	14	85			0.993533
1238		87	12		0.992554
1284	12		87		0.992554
1287	12	87			0.992554
1288			87	12	0.992554
1356	83	16			0.994512
1359			83	16	0.994512
1453	25			75	0.996473
1648	14			85	0.993533
1649	85			14	0.993533
1650	85		14		0.993533
1708			85	14	0.993533
1709			85	14	0.993533
2155	16			83	0.994512
2157	16			83	0.994512
2158			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain