SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7662

Length: 541 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene7662
GAGCTGCGAGAGGGCAGCACGACATCGCTGCATAACGGCAGAAGACTGTTTTGTTGGAGTTCCTTGCAAGGTGATCGAGCTTACAGAGGAACTGCTAGCAACAGCAAAGCAGGCTGAATCAGCTGGTGCAGGGGCAAAAACTGATCCTTCTGTTTCATATGCTAAAAAGCAATCTCAGACTAGAGGGAGCCCAAATCAGTCCCTAGATGAAGCTATGGACCAGGGTTACAGATTTCCTGTTGGTGCTAAAGTTCAAGCTGTTTGGAGTGGTGATGGAGAATGGTATGATGCTACAGTTGAGGGAGTTACCGCCAATGGATACTTTATTGCCTACGATGATTGGGGTAATGAGGAAGAGGTTGATTTTGATAATGTAAGGGAGAAACAAGAGGGAGCTGTAGATGCGTTGCTAGAGGCTGAAAAACAAGCTGAAGCCACCAAACAGGCCATCAAACGAAAATTGCACAAGCTGCTGATGCAAATTTCCAGTCTCGTGATTTACCTGCTAAGCTTACAATTAATCCTGAAGATCCCGAGGATG

Ace file of the UniGene biog3_v1.0_unigene7662 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4978	1/4
SustainPine v2.0	sp_v2.0_unigene9587	1/4
SustainPine v2.0	sp_v2.0_unigene28252	2/4

Source	Descriptions	Term	Type	Identity
AutoFact	survival of motor neuron-related-splicing factor 30 [Arabidopsis thaliana] ref\|NP_849927.1\| survival of motor neuron-related-splicing factor 30 [Arabidopsis thaliana] ref\|NP_001077871.1\| survival of motor neuron-related-splicing factor 30 [Arabidopsis tha	-	-	44%
FL-Next	tr=Putative uncharacterized protein Sb07g001010; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	55%
Blast2go	survival of motor neuron-related-splicing factor 30	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Tudor domain	IPR002999	-	0.0	-
Sma3		IPR018351	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5YLV8

Fln msg: Overlapping hits, possible frame ERROR between 469 and 457, Distance to subject end: 99 aas, your sequence is shorter than subject: 180 - 296

Fln protein: SCERAARHRCITAEDCFVGVPCKVIELTEELLATAKQAESAGAGAKTDPSVSYAKKQSQTRGSPNQSLDEAMDQGYRFPVGAKVQAVWSGDGEWYDATVEGVTANGYFIAYDDWGNEEEVDFDNVREKQEGAVDALLEAEKQAEATKQAIKxxxxxxADANFQSRDLPAKLTINPEDPED

Protein Length: 181

Fln nts: GAGCTGCGAGAGGGCAGCACGACATCGCTGCATAACGGCAGAAGACTGTTTTGTTGGAGTTCCTTGCAAGGTGATCGAGCTTACAGAGGAACTGCTAGCAACAGCAAAGCAGGCTGAATCAGCTGGTGCAGGGGCAAAAACTGATCCTTCTGTTTCATATGCTAAAAAGCAATCTCAGACTAGAGGGAGCCCAAATCAGTCCCTAGATGAAGCTATGGACCAGGGTTACAGATTTCCTGTTGGTGCTAAAGTTCAAGCTGTTTGGAGTGGTGATGGAGAATGGTATGATGCTACAGTTGAGGGAGTTACCGCCAATGGATACTTTATTGCCTACGATGATTGGGGTAATGAGGAAGAGGTTGATTTTGATAATGTAAGGGAGAAACAAGAGGGAGCTGTAGATGCGTTGCTAGAGGCTGAAAAACAAGCTGAAGCCACCAAACAGGCCATCAAAxxxxxxxxxxxxxxxxxxGCTGATGCAAATTTCCAGTCTCGTGATTTACCTGCTAAGCTTACAATTAATCCTGAAGATCCCGAGGATG

Fln Alignment:

Contig7662___KVIELTEELLATAKQAESAGAGAKTDPSVSYAKKQSQTRGSPNQSLDEAMDQGYRFPVGAKVQAVWSGDGEWYDATVEGVTANGYFIAYDDWGNEEEVDFDNVREKQEGAVDXXXXXXXXXXXXXXAIKRxxxxAADANFQSRDLPAKLTINPEDPED
C5YLV8_________________EVITLTEEILATAKQTESAQNAAGLSPP-------NYSAGAQSEGLDD-LSHSHKFAVGTRVQAVWSEDGEWYNATVEALTPNGYYVAYDGWGNREEVDPDNVRLLEEEAADALRQAEKEAEATKMAIKRxxxxAATSDFQARSLPAKLRIEPSDPED

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
95	33		66		0.997452
96	33		66		0.997452
97		66		33	0.997452
98		66	33		0.997452
320	20	80			0.995493
321	20			80	0.995493
322			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain