SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7658

Length: 353 nt

UniGene Fasta

>biog3_v1.0_unigene7658
AATGTGGGATTCTTCATTTTTCTCTGCCTTACAATATACACGGTTGTACAAAACTACCGAAGGTTGTGATCCACAGAGGTGCAATGTTTTGTCTTCTTGCCAGCAGCAGCTGCCATTTGCTTTCATGCCACTCAGAACTACTTTCCTATGTCATGTTACGATTTGATTATGCTGGAATTGCTGCACTTATAGCAACTTCATTTTAACATCCAATGTATTACTCATTTATGTGCAAGCCATTCTTCAGGAATATGTATTTGGGTATCATCACTTTTGGGGGAGTTGTTACGATGCTGGCATCCCTGTTGCCTGTTTTTCAACATCCAAAATTTCGCACGTTCAGGGCATCATTA

Ace file of the UniGene biog3_v1.0_unigene7658

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene562	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	hemolysin III-related family protein [Lilium longiflorum]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	response to hormone stimulus	GO:0009725	Biological Process	79%
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	79%
Blast2go	receptor activity	GO:0004872	Molecular Function	79%
Blast2go	integral to membrane	GO:0016021	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Hly-III-related	IPR004254	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMS0

Fln msg: Distance to subject end: 96 aas, your sequence is shorter than subject: 117 - 432

Fln protein: CGILHFSLPYNIHGCTKLPKVVIHRGAMFCLLASSSCHLLSCHSELLSYVMLRFDYAGIAALIATSF*HPMYYSFMCKPFFRNMYLGIITFGGVVTMLASLLPVFQHPKFRTFRASL

Protein Length: 118

Fln nts: AATGTGGGATTCTTCATTTTTCTCTGCCTTACAATATACACGGTTGTACAAAACTACCGAAGGTTGTGATCCACAGAGGTGCAATGTTTTGTCTTCTTGCCAGCAGCAGCTGCCATTTGCTTTCATGCCACTCAGAACTACTTTCCTATGTCATGTTACGATTTGATTATGCTGGAATTGCTGCACTTATAGCAACTTCATTTTAACATCCAATGTATTACTCATTTATGTGCAAGCCATTCTTCAGGAATATGTATTTGGGTATCATCACTTTTGGGGGAGTTGTTACGATGCTGGCATCCCTGTTGCCTGTTTTTCAACATCCAAAATTTCGCACGTTCAGGGCATCATTA

Fln Alignment:

Contig7658___PYNIHGCTKLPKVVIHRGAMFXXXXXXXXXXXXXXXXXXXYVMLRFDYAGIAALIATSF*HPMYYSFMCKPFFRNMYLGIITFGGVVTMLASLLPVFQHPKFRTFRASL
B8LMS0_________________PYLQRPITRWPFFVFLGGAMFCLLASSSCHLLSCHSELFSYIMLRLDYAGIAALISTSFYPPVYYTFMCKPFFKNMYLGIITLGGVATMLASLLPVFQHPKFRTFRASL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
216	33		66		0.997452
218			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain