SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7634

Length: 862 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7634

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5989	7/10
SustainPine v2.0	sp_v2.0_unigene7931	2/10
SustainPine v2.0	sp_v2.0_unigene66021	1/10

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial transcription termination factor family protein n=2 Tax=Arabidopsis RepID=O64531_ARATH	-	-	9.0e-22	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	mitochondrial transcription termination factor family protein	-	-	0.0	55%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochodrial transcription termination factor-related	IPR003690	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAV5

Fln msg: your sequence is shorter than subject: 258 - 335

Fln protein: MLFKLMPALVRTRSTHTSQQAVHFLRASGFTEYQVRKIITRDPAILCLNADRKLKPKIELMKTLGVTARELGNAISRQPRLLGCNLEKTLIPNIQYVRNLFGSDADVSKVFKWASEILVLSNGPEILEKRLKHLASFGVPEDDVKEFARRNPMILTLSMDKVQKSMDYFIHTVGLPPEFLLTHSKLLLCSLDCRIKPRHRVMKSISAMQPSKHLPNLTYVFLLSERQFLEKCVKCSPHATKLLEIYSGKPVDLDIIQ*

Protein Length: 259

Fln nts: AATGTTGTTTAAACTAATGCCAGCCTTGGTCAGAACAAGATCCACTCATACGTCCCAACAAGCGGTTCACTTCCTGAGAGCTTCAGGATTCACAGAATACCAGGTAAGGAAAATCATTACCAGAGACCCAGCTATTCTTTGTCTCAACGCTGATCGGAAGTTGAAACCCAAGATTGAGTTGATGAAAACGTTGGGCGTTACTGCACGAGAGTTGGGAAATGCCATATCCCGACAACCGAGATTGCTTGGCTGCAATCTAGAGAAAACTCTGATCCCAAACATCCAGTATGTTCGAAACCTGTTCGGATCAGACGCTGACGTATCCAAGGTTTTCAAATGGGCATCTGAGATTTTAGTGCTTAGTAATGGGCCTGAAATTTTGGAAAAGAGATTGAAGCATTTGGCAAGTTTTGGTGTCCCGGAAGATGATGTCAAGGAGTTTGCTAGGAGGAACCCAATGATACTAACTCTTTCCATGGATAAAGTGCAGAAAAGCATGGACTATTTCATACATACTGTAGGGCTTCCTCCAGAGTTTCTCTTAACACATTCTAAGCTCCTGTTGTGTAGTTTGGACTGTAGAATCAAGCCTCGTCACAGAGTTATGAAATCTATTAGTGCAATGCAACCCTCGAAACATCTTCCTAATCTCACTTATGTTTTTCTTTTAAGTGAGCGACAGTTCCTTGAAAAGTGTGTGAAATGCAGTCCTCATGCCACAAAGTTACTTGAAATTTACAGTGGCAAGCCAGTTGATCTTGACATTATCCAATGA___CAATGTCCTCTTCGAAAAGACTGGAAAGTTCAGGATTGGATTGCATCATATTGTTGTTATTCAATGTGAGAAAGAGATTCAAGCACA

Fln Alignment:

Contig7634___LFKLMPALVRTRSTHTSQQAVHFLRASGFTEYQVRKIITRDPAILCLNADRKLKPKIELMKTLGVTARELGNAISRQPRLLGCNLEKTLIPNIQYVRNLFGSDADVSKVFKWASEILVLSNGPEILEKRLKHLASFGVPEDDVKEFARRNPMILTLSMDKVQKSMDYFIHTVGLPPEFXXXXXXXXXXXXDCRIKPRHRVMKSISAMQPSKHLPNLTYVFLLSERQFLEKCVKCSPHATKLLEIYSGKPVDLDIIQ
D5AAV5_________________ILKKRPHLVRTRSTHTAQQAVQLLRDSGFTEDQVCKIITRNPSILTYNADRQLKPKIEFMKTLGLTAHEIGNVTCQGPRLLSHSIEKTVQPNILYLQNLFGSEADVSKVLKRVPGILVNTNMPERLRNKLKYLASFGIPENEIKDLVRRNPVILNVSMDKMQKNMDFIIHTAGLPAKFLLSCPLLPAFSLESRIKPRHKVLMSISALQPSERLPSLTYVLSLSERKFLEKYVNCSPYATKLLEIYRGKPVGLDVIQ

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
116	75		25		0.996473
125			60	40	1.0
126	60			40	1.0
148	40	60			1.0
171	60			40	1.0
180		40		60	1.0
185	60		40		1.0
197		50	50		1.0
207	50		50		1.0
212		50		50	1.0
214		50	50		1.0
259	66		33		0.997452
272	66			33	0.997452
273		33		66	0.997452
352	25			75	0.996473
353	25			75	0.996473
355	75		25		0.996473
356	25		50	25	0.995533
360	50			50	1.0
368	33		66		0.997452
369			66	33	0.997452
373		33		66	0.997452
397	33		66		0.997452
611	66		33		0.997452
638	33		66		0.997452
649	66		33		0.997452
761		33		66	0.997452
765	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain