SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7628

Length: 2496 nt

UniGene Fasta

>biog3_v1.0_unigene7628
ATCAACGCAGAGTACGCGGGGGATGTGGTCGCTAAGATAATCCGATGTGAATCATTGTATCTGTTCAGGGTCAGATCTGGGAGTATTCAGAATCAGATCTGTTTATATTTATGTTGAGAACAAACTAATTTGTGATTGTTCATTTGGGTTTTGTGGTTCTCAAGGGCTCTTCCAAGTTGAGCCCTCACTCAATGGCTTCTGGGGAGTTTGTTTGCGCTCTGCTACTTGTATTTTTAGTCTCAGCTGCAAATTGCTTCTATCTTCCTGGTGTAGCCCCTCAGGACTTCAACAAGGGTGATGAGCTCCAGGTTAAAGTGAACAAGCTGTCTTCCATAAAGACACAGCTTCCTTATGATTATTATTCACTGAATTACTGTAAACCAAAAACAATTGTCAACAGTGCCGAGAATCTCGGAGAAGTTCTTCGCGGAGATCGCATTGAGAACTCTCCTTATGTATTTCACATGAGAGAGGAGAAGCTCTGTAATTATGTATGCCGGATAAAGCTGGATGCAAAGTCAGCAAAGAACTTCAAGGAGAAAATAGATGACGAATATCGTGTTAATATGATTCTGGACAATCTACCCGTGGCTGTAGCCAGACAAAGAGCAGATGGAACTCTAGTTACTTCATATGAACATGGCTTCCGTGTTGGGTTTAAAGCTAGCTATGCAGGGAGTACAGAAGAGAGATACTTTATACACAACCATCTATCTTTCGAGGTTAAGTTTCACAAAGATTCAGAGGCTGATTCTGCTAGGATTGTTGGATTTGAAGTCACACCATATAGCGTCAAGCATGAGTTTGAGCAACCTTGGTCTGAGGATAATCCCCGTTTGACAACCTGCAACCCAAATACCAAACACTACGTTTCACAAACCAATAGTCCACAAGAAGTTGACGAGGGTAAAGATATTATATTTACTTACGATGTGTCATTCAAGGAAAGCCCTATCAAATGGGCTTCTCGATGGGATACATATCTTCTCATGACAGATGATCAGATCCACTGGTTCTCTATTATCAACTCATTAATGATTGTCTTGTTCCTTTCTGGGATGGTGGCAATGATTATGATGAGAACCTTGTATCGGGATATCTCAAATTATAATCAATTGGAGACACAGGATGAAGCCCAAGAAGAAACTGGATGGAAGCTTGTCCATGGAGATGTATTCAGGTCCCCAAGTAATGCAGGTTTACTATGTGTCTATGCAGGAACTGGGGTACAGTTTTTTGGGATGACACTTGTTACAATGATATTTGCCATGCTTGGGTTTCTTTCACCATCCAATCGTGGTGGACTGATGACAGCTATGGTTCTCTTGTGGGTGTTCATGGGTTTGTTTGCTGGTTACTCTTCTGCTCGTCTGTATAAGATGTTCAAGGGCACAGAATGGAAAACAAACACGCTGAAGACTGCGTTCACCTTCCCAGGCATTGTTTTTGGCATTTTCTTTGTCCTCAATGCACTGATCTGGGGTGAAAAGTCCTCTGGTGCAGTACCATTTGGGACAATGTTTGCTTTGGTATTTTTATGGTTTGGGATATCTGTGCCTTTGGTCTTTGTTGGTAGTTACTTTGGTTACAAGAAACCTGCAATTGAAGATCCTGTTAAGACAAATAAAATTCCCAGGCAGATTCCAGAGCAGGCATGGTACATGCAGCCAGTTTTCTCAGTACTCATTGGAGGCATATTACCATTTGGCGCGGTTTTCATTGAATTATTCTTCATCTTAACATCGATCTGGCTGCATCAATTTTATTACATTTTTGGGTTTCTGTTCATTGTCTTTGTTATCCTTATTGTTACTTGTGCGGAGATCACTATTGTCCTCTGCTACTTTCAGTTGTGTAGTGAGGACTACCACTGGTGGTGGAGAGCTTATCTAACTTCAGGCTCATCTGCACTTTACTTATTCCTGTATGCTACATTCTACTTCTTCACCAAGCTGGAGATTACGAAACTTGTCTCTGGTATTCTGTACTTCGGCTACATGACAATTATCTCATATGCTTTCTTTGTATTGACGGGTACAATGGGTTTCTACGCATGCTTCTGGTTTGTACGGACCATTTATGCTTCAGTGAAGATTGACTGAAGTTACATGCTGTAGCCAAATTTTCCTCAAGGCTCAAATTTGCATTTGAGCAGAATCAGGTGGTAGAATGCTAGATGTGCGTTCTTTGCTCTAGTGTTTAGGAGAATAGAATAGGAATTTAATTGTGCTAGCAAGAGGAGATATCTGAGAGGATATCATGAATATCACGTATTAGTTGGGTAGGAGGTAGGAGGTACAATTTTTTCAAAGTTGCAGGCTACCGAGTTATTCTGCATTGTACTCAAATGAGTTTGTTAGGATTGATTTTTTATTTCTTGATGTACTGTTTGCAAAGAATTATGATTCATACTTGCTATGGCTGTCATGCCTTTCAACCAGACTCTGGTGGCATACTAATTCCTATACAAGATTTATGGTATATGATATACAGATA

Ace file of the UniGene biog3_v1.0_unigene7628

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18926	170/173
SustainPine v2.0	sp_v2.0_unigene78559	1/173

Source	Descriptions	Term	Type	Identity
AutoFact	protein transmembrane nine 7 [Arabidopsis thaliana] dbj\|BAB01926.1\| multispanning membrane protein-like [Arabidopsis thaliana] gb\|AEE75410.1\| protein transmembrane nine 7 [Arabidopsis thaliana]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	endosomal p24a protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	cellular zinc ion homeostasis	GO:0006882	Biological Process	88%
Blast2go	cellular copper ion homeostasis	GO:0006878	Biological Process	88%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	88%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	88%
Blast2go	nucleus	GO:0005634	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nonaspanin (TM9SF)	IPR004240	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC25

Fln msg: your sequence is longer than subject: 637 - 370

Fln protein: MASGEFVCALLLVFLVSAANCFYLPGVAPQDFNKGDELQVKVNKLSSIKTQLPYDYYSLNYCKPKTIVNSAENLGEVLRGDRIENSPYVFHMREEKLCNYVCRIKLDAKSAKNFKEKIDDEYRVNMILDNLPVAVARQRADGTLVTSYEHGFRVGFKASYAGSTEERYFIHNHLSFEVKFHKDSEADSARIVGFEVTPYSVKHEFEQPWSEDNPRLTTCNPNTKHYVSQTNSPQEVDEGKDIIFTYDVSFKESPIKWASRWDTYLLMTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISNYNQLETQDEAQEETGWKLVHGDVFRSPSNAGLLCVYAGTGVQFFGMTLVTMIFAMLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGTEWKTNTLKTAFTFPGIVFGIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFVGSYFGYKKPAIEDPVKTNKIPRQIPEQAWYMQPVFSVLIGGILPFGAVFIELFFILTSIWLHQFYYIFGFLFIVFVILIVTCAEITIVLCYFQLCSEDYHWWWRAYLTSGSSALYLFLYATFYFFTKLEITKLVSGILYFGYMTIISYAFFVLTGTMGFYACFWFVRTIYASVKID*

Protein Length: 638

Fln nts: ATCAACGCAGAGTACGCGGGGGATGTGGTCGCTAAGATAATCCGATGTGAATCATTGTATCTGTTCAGGGTCAGATCTGGGAGTATTCAGAATCAGATCTGTTTATATTTATGTTGAGAACAAACTAATTTGTGATTGTTCATTTGGGTTTTGTGGTTCTCAAGGGCTCTTCCAAGTTGAGCCCTCACTCA_-_ATGGCTTCTGGGGAGTTTGTTTGCGCTCTGCTACTTGTATTTTTAGTCTCAGCTGCAAATTGCTTCTATCTTCCTGGTGTAGCCCCTCAGGACTTCAACAAGGGTGATGAGCTCCAGGTTAAAGTGAACAAGCTGTCTTCCATAAAGACACAGCTTCCTTATGATTATTATTCACTGAATTACTGTAAACCAAAAACAATTGTCAACAGTGCCGAGAATCTCGGAGAAGTTCTTCGCGGAGATCGCATTGAGAACTCTCCTTATGTATTTCACATGAGAGAGGAGAAGCTCTGTAATTATGTATGCCGGATAAAGCTGGATGCAAAGTCAGCAAAGAACTTCAAGGAGAAAATAGATGACGAATATCGTGTTAATATGATTCTGGACAATCTACCCGTGGCTGTAGCCAGACAAAGAGCAGATGGAACTCTAGTTACTTCATATGAACATGGCTTCCGTGTTGGGTTTAAAGCTAGCTATGCAGGGAGTACAGAAGAGAGATACTTTATACACAACCATCTATCTTTCGAGGTTAAGTTTCACAAAGATTCAGAGGCTGATTCTGCTAGGATTGTTGGATTTGAAGTCACACCATATAGCGTCAAGCATGAGTTTGAGCAACCTTGGTCTGAGGATAATCCCCGTTTGACAACCTGCAACCCAAATACCAAACACTACGTTTCACAAACCAATAGTCCACAAGAAGTTGACGAGGGTAAAGATATTATATTTACTTACGATGTGTCATTCAAGGAAAGCCCTATCAAATGGGCTTCTCGATGGGATACATATCTTCTCATGACAGATGATCAGATCCACTGGTTCTCTATTATCAACTCATTAATGATTGTCTTGTTCCTTTCTGGGATGGTGGCAATGATTATGATGAGAACCTTGTATCGGGATATCTCAAATTATAATCAATTGGAGACACAGGATGAAGCCCAAGAAGAAACTGGATGGAAGCTTGTCCATGGAGATGTATTCAGGTCCCCAAGTAATGCAGGTTTACTATGTGTCTATGCAGGAACTGGGGTACAGTTTTTTGGGATGACACTTGTTACAATGATATTTGCCATGCTTGGGTTTCTTTCACCATCCAATCGTGGTGGACTGATGACAGCTATGGTTCTCTTGTGGGTGTTCATGGGTTTGTTTGCTGGTTACTCTTCTGCTCGTCTGTATAAGATGTTCAAGGGCACAGAATGGAAAACAAACACGCTGAAGACTGCGTTCACCTTCCCAGGCATTGTTTTTGGCATTTTCTTTGTCCTCAATGCACTGATCTGGGGTGAAAAGTCCTCTGGTGCAGTACCATTTGGGACAATGTTTGCTTTGGTATTTTTATGGTTTGGGATATCTGTGCCTTTGGTCTTTGTTGGTAGTTACTTTGGTTACAAGAAACCTGCAATTGAAGATCCTGTTAAGACAAATAAAATTCCCAGGCAGATTCCAGAGCAGGCATGGTACATGCAGCCAGTTTTCTCAGTACTCATTGGAGGCATATTACCATTTGGCGCGGTTTTCATTGAATTATTCTTCATCTTAACATCGATCTGGCTGCATCAATTTTATTACATTTTTGGGTTTCTGTTCATTGTCTTTGTTATCCTTATTGTTACTTGTGCGGAGATCACTATTGTCCTCTGCTACTTTCAGTTGTGTAGTGAGGACTACCACTGGTGGTGGAGAGCTTATCTAACTTCAGGCTCATCTGCACTTTACTTATTCCTGTATGCTACATTCTACTTCTTCACCAAGCTGGAGATTACGAAACTTGTCTCTGGTATTCTGTACTTCGGCTACATGACAATTATCTCATATGCTTTCTTTGTATTGACGGGTACAATGGGTTTCTACGCATGCTTCTGGTTTGTACGGACCATTTATGCTTCAGTGAAGATTGACTGA___AGTTACATGCTGTAGCCAAATTTTCCTCAAGGCTCAAATTTGCATTTGAGCAGAATCAGGTGGTAGAATGCTAGATGTGCGTTCTTTGCTCTAGTGTTTAGGAGAATAGAATAGGAATTTAATTGTGCTAGCAAGAGGAGATATCTGAGAGGATATCATGAATATCACGTATTAGTTGGGTAGGAGGTAGGAGGTACAATTTTTTCAAAGTTGCAGGCTACCGAGTTATTCTGCATTGTACTCAAATGAGTTTGTTAGGATTGATTTTTTATTTCTTGATGTACTGTTTGCAAAGAATTATGATTCATACTTGCTATGGCTGTCATGCCTTTCAACCAGACTCTGGTGGCATACTAATTCCTATACAAGATTTATGGTATATGATATACAGATA

Fln Alignment:

Contig7628___MTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISNYNQLETQDEAQEETGWKLVHGDVFRSPSNAGLLCVYAGTGVQFFGMTLVTMIFAMLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGTEWKTNTLKTAFTFPGIVFGIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFVGSYFGYKKPAIEDPVKTNKIPRQIPEQAWYMQPVFSVLIGGILPFGAVFIELFFILTSIWLHQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYHWWWRAYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMTIISYAFFVLTGTMGFYACFWFVRTIYASVKID
D5AC25_________________MTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISKYNQLETQDEAQEETGWKLVHGDVFRPPTHSSLLCVYVGTGVQFFGMTLVTMIFAMLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGSEWKKNTLKTAFMFPGIVFCIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFIGSYFGYKKPAIEDPVKTNKIPRQIPEQAWYMQPVFSVLIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLVTCAEITIVLCYFQLCSEDYHWWWRAYLTSGSSALYLFLYAIFYFFTKLEITKLVSGILYFGYMTIISYAFFVLTGTIGFYACFWFVRKIYSSVKID

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
216	25		75		0.996473
217	25	75			0.996473
219		75		25	0.996473
251	14			85	0.993533
254		85		14	0.993533
336	83	16			0.994512
338			83	16	0.994512
339	83			16	0.994512
356	14			85	0.993533
358	85		14		0.993533
362	12			87	0.992554
364		87	12		0.992554
365	87			12	0.992554
388	11	88			0.923564
389	90			10	0.90298
390	90		10		0.90298
400			90	10	0.90298
493	13			86	0.999973
498		85		14	0.999981
684			88	11	0.923564
685	88			11	0.923564
691		25	75		1.0
694	75			25	1.0
697	16			83	0.994512
698		16		83	0.994512
701	83			16	0.994512
717	33			66	0.997452
1068	90			10	0.999898
1301	14			85	0.993533
1302		14	85		0.993533
1305		85		14	0.993533
1395			66	33	0.997452
1396	66			33	0.997452
2412	83			16	0.994512
2445	25			75	0.996473
2449			75	25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain