SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7601

Length: 396 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene7601
AGCTACCATCCAGGTTGTTCTTGATGGATATTCAGCTCCTCTTACGGCAGGGAACTTTACAAAACTTGTGATAGATGGAGCATATAACGGACTTAAGCTGAAAACTACTGAGCAAGCAGTCATTTCTGACAATGAGCGTGCTGAAGCTGGGTTTAACCTACCTATAGAGATATTGCCAGCTGGTGGGTTTGAACCGTTGTATAGGACGACTTTGAGTGTTCAGGATGGCGAGCTACCTGTACTCCCCTTATCTGTATATGGAGCAATTGCAATGGCACACAACCCAATATCAGAGGACTACTCATCACCATCACAATTTTTCTTTTATCTATATGACAAACGCAATGCTGGTCTAGGTGGACTTTCATTTGATGAGGGGCAATTTTCTGTTACATT

Ace file of the UniGene biog3_v1.0_unigene7601 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6579	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	putative peptidyl-prolycis-trans isomerase protein [Oryza sativa Japonica Group] dbj\|BAD30114.1\| putative peptidyl-prolycis-trans isomerase protein [Oryza sativa Japonica Group]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	peptidyl-prolycis-trans isomerase protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	82%
Blast2go	protein peptidyl-prolyl isomerization	GO:0000413	Biological Process	82%
Blast2go	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	82%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	82%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRT4

Fln msg: Distance to subject end: 37 aas, your sequence is shorter than subject: 131 - 484

Fln protein: ATIQVVLDGYSAPLTAGNFTKLVIDGAYNGLKLKTTEQAVISDNERAEAGFNLPIEILPAGGFEPLYRTTLSVQDGELPVLPLSVYGAIAMAHNPISEDYSSPSQFFFYLYDKRNAGLGGLSFDEGQFSVT

Protein Length: 132

Fln nts: AGCTACCATCCAGGTTGTTCTTGATGGATATTCAGCTCCTCTTACGGCAGGGAACTTTACAAAACTTGTGATAGATGGAGCATATAACGGACTTAAGCTGAAAACTACTGAGCAAGCAGTCATTTCTGACAATGAGCGTGCTGAAGCTGGGTTTAACCTACCTATAGAGATATTGCCAGCTGGTGGGTTTGAACCGTTGTATAGGACGACTTTGAGTGTTCAGGATGGCGAGCTACCTGTACTCCCCTTATCTGTATATGGAGCAATTGCAATGGCACACAACCCAATATCAGAGGACTACTCATCACCATCACAATTTTTCTTTTATCTATATGACAAACGCAATGCTGGTCTAGGTGGACTTTCATTTGATGAGGGGCAATTTTCTGTTACATT

Fln Alignment:

Contig7601___ATIQVVLDGYSAPLTAGNFTKLVIDGAYNGLKLKTTEQAVISDNERAEAGFNLPIEILPAGGFEPLYRTTLSVQDGELPVLPLSVYGAIAMAHNPISEDYSSPSQFFFYLYDKRNAGLGGLSFDEGQFSV
B8LRT4_________________ATIQVVLDGYSAPLTAGNFAKLVIDGAYNGLKLKNTEQAVISDNERDEVGFSLPVEIMPAGGFQPLYRTTLSVQDGELPVLPLSVYGSIAMAHNPISEDYSSPSQFFFYLYDKRNAGLGGLSFDEGQFSV

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
173	40			60	1.0
174		60		40	1.0
175		60	40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain