SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7591

Length: 1572 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7591

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17261	7/29
SustainPine v2.0	sp_v2.0_unigene20497	22/29

Source	Descriptions	Term	Type	Identity
AutoFact	translation initiation factor eIF-2B delta subunit [Arabidopsis thaliana] dbj\|BAB10154.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL32601.1\| Unknown protein [Arabidopsis thaliana] gb\|AAP68227.1\| At5g38640 [Arabidopsis thaliana] gb\|AED94344.1\| t	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	27%
Blast2go	translation initiation factor eif-2b subunit delta-like	-	-	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Initiation factor 2B-related	IPR000649	-	0.0	-
Sma3	ABC transporter, conserved site	IPR017871	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXX1

Fln msg:

Fln protein: MQFDDEHRVAKAKRRSLVEQTEAKNRVELFRHLPQFVHGLQLPALEEKFFQEDPMHPHPAVYKVGLQYLTGDIVGGNARCLAMLSAFQEAIKDYTTPPEKSFVRDLTAKINSYISFLITCRPLSISMGNAIKFLKARIAKLAVTLSESEAKSSLLLDINRFIHEKIVFADKVIVKHAVTKIRDGDVLLTFGSSCVVEMILLHAHELGRNFRVVIVDSRPKLEGLKMLRRLLAKGLNCTYTHINAISYIMHEVTRVFLGAASVLSNGTVYSRVGTACVAMVAHASHVPVLICCEAYKFHERVQLDSICSNELGDPDALAKIRGRDSDHLEGWANNKHLQLLNLTYDATPADYVSMIVTDYGMVPPTSVPVIVREYRREYLLI*

Protein Length: 383

Fln nts: CGAGTTTGAGTCGAAGGAGCAGCCGGAGGAGAAGATTCGAAATCGAAGGCGTTGAAAGAGAGAACTTCAAAGGCTGAAAGACGTGCCCTTCAAGAAACTCAGAGGGCAGCTAAAGCAGCAGCAAAGGAGACAGGTGGAAACAAGGGTGGAAATGGACCAGCAAAAGACACAAAGAGTCCAAAGGCTCCACCACAGAGGAAAGACAGTAACACGGATAGAAAACAAGTTGCAACTTTAGACAGAAAATTGACGGAAAGGAGCTTGGAAAAAGAGAAAAAGAAAGATGTACCTGGTGTTCGG_-_ATGCAATTTGATGATGAACATCGAGTGGCAAAGGCTAAGAGGCGCTCACTAGTTGAGCAGACTGAAGCTAAAAATAGAGTTGAGCTATTTAGGCATTTGCCACAATTTGTTCATGGATTGCAACTTCCTGCCCTTGAAGAGAAGTTCTTCCAAGAAGATCCAATGCATCCTCATCCGGCTGTCTACAAGGTTGGGCTTCAATATCTGACGGGAGATATAGTTGGTGGAAATGCTCGATGTCTTGCCATGCTTTCTGCATTCCAAGAGGCTATTAAAGACTACACTACACCACCGGAGAAAAGCTTTGTACGCGACTTGACTGCAAAAATTAATAGCTATATTTCATTTCTCATTACATGCAGACCTCTTTCGATTAGCATGGGTAATGCCATTAAGTTCTTGAAAGCGCGGATTGCAAAGTTAGCAGTGACTCTTTCGGAGTCAGAAGCAAAGTCCTCTCTTCTCTTAGATATCAATCGGTTTATACATGAGAAGATTGTATTTGCTGACAAAGTCATTGTAAAGCATGCAGTGACGAAAATCAGAGATGGAGATGTATTACTTACTTTTGGATCATCTTGTGTGGTGGAGATGATATTATTACATGCTCATGAGCTAGGAAGAAATTTTCGTGTTGTGATAGTGGACTCGAGGCCAAAACTGGAAGGACTAAAAATGCTTCGCAGATTGTTGGCAAAGGGTCTCAACTGTACATATACTCATATAAATGCAATTTCCTACATCATGCATGAAGTAACCAGAGTATTCCTTGGAGCTGCCTCCGTTTTATCGAATGGAACAGTTTATTCAAGAGTGGGTACAGCTTGTGTAGCCATGGTTGCTCATGCATCTCATGTTCCAGTGTTGATATGTTGTGAAGCATACAAGTTTCACGAGAGAGTTCAACTGGATTCTATTTGCTCAAATGAACTGGGTGATCCAGATGCCCTCGCAAAAATTCGAGGAAGGGACTCTGATCATTTGGAAGGCTGGGCAAATAATAAACACCTGCAGCTTCTAAATCTAACGTATGACGCAACACCGGCAGATTATGTCTCAATGATTGTTACAGATTATGGCATGGTACCTCCAACTAGTGTGCCTGTCATTGTTAGAGAATACAGGAGGGAATATCTGTTGATATAA___ACGAATTTTTTTTGAAGAAAGAGCAGCTCCTTCGGAGTTATTATGGTGAAGGTATTAGAGCAGGGTTTCTATCTTTCATTCGTTGATGGACACTGTTTATAGTTTGCTCTTTTTTGATCTATATAA

Fln Alignment:

Contig7591___ADKVIVKHAVTKIRDGDVLLTFGSSCVVEMILLHAHELGRNFRVVIVDSRPKLEGLKMLRRLLAKGLNCTYTHINAISYIMHEVTRVFLGAASVLSNGTVYSRVGTACVAMVAHASHVPVLICCEAYKFHERVQLDSICSNELGDPDALAKIRGRDSDHLEGWAN-----NKHLQLLNLTYDATPADYVSMIVTDYGMVPPTSV
A9NXX1_________________ARKTIAMLGQDFLQDGSTILVHGFSRVVLALLRMAASNGKHFSVVCTEGRPDNTGIEMSKEMVTVGFPVKLILDSAVAYTMEKIDMVLFGADGVVESGGIINMIGTYQVALVAHSMNKPVYVAAESYKFARLYPLDQ-----------------RDMPPVPRTINFEVPVPKSVEVESSARDYTPPQYLTLLFTDLGVLTPSAV

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
119	20	80			0.995493
121			80	20	0.995493
122		80	20		0.995493
123	80			20	0.995493
1016	33	66			0.997452
1019	66		33		0.997452
1064	16		83		0.994512
1065	83			16	0.994512
1200		16	83		0.994512
1202			83	16	0.994512
1203	83			16	0.994512
1351	33		66		0.997452
1387	20			80	0.995493
1388		20	80		0.995493
1389	20		80		0.995493
1391	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain