SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7566

Length: 528 nt

UniGene Fasta

>biog3_v1.0_unigene7566
CAGTTGGAGTTGGACTCAGACGGTTACATTGTGACAAATCCTGGAACCACTCAGACGAGTATATCGGGGGTTTTCGCCGCCGGAGATGTTCAGGACAAGAAATGGCGCCAAGCCATCACCGCTGCTGGCACAGGATGCATGGCAGCACTAGAAGCCGAGCACTTTTTACAGGAGGTAGGGGTACAAGAGGGCAAGTATAGTTCATCGCTTTAGGTGGACACGGGTGATATTTACAGTTCCAAACAGAAGTCTTCTTTTTCCGTACTCTCCATAGAACACTCTTCTATTCAGCTTAGTTGTGGGTCTGAATTTTACTATTAACGCTATATGCTATATAACAGCATCAAATGACCCTTCCCATTTTTCCCCATGGAGGTATTTATTCACTTTGTACTATGTTATTTTTATGAGAAGAGTCCGGATTACCTTTTCCATTGAAGAGATGAGTCCGGATTACCTTTTCCATTGGAGAGATGTTTATATTATTTTAAGTAGCGTGTCTTGAATTTTTCGATATGTTTACACATT

Ace file of the UniGene biog3_v1.0_unigene7566

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27784	1/6
SustainPine v2.0	sp_v2.0_unigene33367	4/6

Source	Descriptions	Term	Type	Identity
AutoFact	Thioredoxin reductase n=2 Tax=Picea sitchensis RepID=A9NXV4_PICSI	-	-	85%
FL-Next	sp=Thioredoxin reductase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	thioredoxin reductase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Thioredoxin-disulfide reductase.	EC:1.8.1.9	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pyrimidine metabolism	00240		0.0	87%
Blast2go	Selenocompound metabolism	00450		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	seed development	GO:0048316	Biological Process	87%
Blast2go	cell growth	GO:0016049	Biological Process	87%
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	87%
Blast2go	thioredoxin biosynthetic process	GO:0042964	Biological Process	87%
Blast2go	pollen germination	GO:0009846	Biological Process	87%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	87%
Blast2go	thioredoxin-disulfide reductase activity	GO:0004791	Molecular Function	87%
Blast2go	cytosol	GO:0005829	Cellular Component	87%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	87%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II, active site	IPR008255	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	Thioredoxin reductase	IPR005982	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU83

Fln msg: your sequence is shorter than subject: 71 - 340

Fln protein: QLELDSDGYIVTNPGTTQTSISGVFAAGDVQDKKWRQAITAAGTGCMAALEAEHFLQEVGVQEGKYSSSL*

Protein Length: 72

Fln nts: CAGTTGGAGTTGGACTCAGACGGTTACATTGTGACAAATCCTGGAACCACTCAGACGAGTATATCGGGGGTTTTCGCCGCCGGAGATGTTCAGGACAAGAAATGGCGCCAAGCCATCACCGCTGCTGGCACAGGATGCATGGCAGCACTAGAAGCCGAGCACTTTTTACAGGAGGTAGGGGTACAAGAGGGCAAGTATAGTTCATCGCTTTAG___GTGGACACGGGTGATATTTACAGTTCCAAACAGAAGTCTTCTTTTTCCGTACTCTCCATAGAACACTCTTCTATTCAGCTTAGTTGTGGGTCTGAATTTTACTATTAACGCTATATGCTATATAACAGCATCAAATGACCCTTCCCATTTTTCCCCATGGAGGTATTTATTCACTTTGTACTATGTTATTTTTATGAGAAGAGTCCGGATTACCTTTTCCATTGAAGAGATGAGTCCGGATTACCTTTTCCATTGGAGAGATGTTTATATTATTTTAAGTAGCGTGTCTTGAATTTTTCGATATGTTTACACATT

Fln Alignment:

Contig7566___QLELDSDGYIVTNPGTTQTSISGVFAAGDVQDKKWRQAITAAGTGCMAALEAEHFLQEVGVQEGKYSSSL
A9NU83_________________QLELDTDGYIVTKPGTTQTSIPGVFAAGDVQDKKWRQAITAAGTGCMAALEAEHFLQEIGAQEGKYSSLL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
134	80		20		0.995493
248	20		80		0.995493
249	80	20			0.995493
251			80	20	0.995493
440	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain