SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7564

Length: 2129 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene7564
AGGGGTAAGATCTTCAAAATCTTGGAGTTCCAATGAATTTTCTCGCGTTGTTTTCATCAATGGCCGCCGGCAAAGACGAGACTTCTGCCTCAGCCGGTGAGGTCGAAACCGTCAAAGCCGAGGCAGGAGCGGTGAAAACGGTAGAGGCCAATGGAACTGATGAAACTGTCAAAGCCGAAGTAGTCGAGGTGGCGGAGGCTAATGGAAATGGTGCTGCAGAGAGCAGTCCTGTAATAGAGCCACAGCTGACTTCATTCAAGGAGGAGAGCAACTTCGTTTCTGATTTGAAGGAATCAGAGAGGAAAGCATTGCAGGAGTTGAAATGCCGGATCGAGGAAGCAATCATGAAAAATGAATTCAGCGAGCATGAAAACAAGAAATCCGATGGTAAGGATGGTGACGCCAAAGAAACCGAGGCAGAGAAGCCTGCAGATGAGAAAGAAGCGGAGAAGGAAGAACTGAAAGTTCTAGAGACTGTAACGGAAACTGACGTTAAAGTTGGAGACGTGGAGGTGAAAAATGAAGAAAACGAGGTAATTGTGACAGAAGAGCTTTCTGACAAGAAAGCTGTTGAAGAACAGGGGCCTAAAGTCGAAGAAAGCGTTGTTGTAGAAACCGTTACAATCACCAGCGAGACTCTGGATGCATCGGCTTCTGGTGCTGAGAATGCTTCAGAGGCTAAAGCTGTTGAATCTGGAGCTGTAACTGGTGAAGCGGAAACTGTCGAAGTCACTGTAGAGACTTTCGAAGCTGAAACAGAGAAATTTAAGGCCCCAGATGTTTATCTCTGGGGAGTTCCTCTGCTTCACACCAAAGGAGACGAGAGAACTGATGTGATTCTGTTGAAATTTCTCCGAGCGAGGGACTTCAAAGTACAGGAAGCCTTTGAAATGCTGAAGAACACCGTTCTGTGGAGGAAGAGCTTCAAAACGGACTCCATATTGGAAGAAGACTTCGGTAATGACCTTGATGGAGTAGCTTACATGAACGGATATGACAAAGAAGGTCATCCCGTTTGTTACAATGTTTATGGTGTCTTCCAGGATAAGGAACTTTATCAGAAGACTTTTGGCACAGAAGAGAAACGCCAGAGGTTCTTGCGATGGAGAGTTCAGTTACTGGAGAAGGGGATTCAGCAGCTCAGTTTCAGCCCTGGGGGCGTGAACTCCATGGTTCAGATCACTGATCTGAAGAATTCCCCCGGGCCTGGAAAGAAAGAGTTGAGACAAGCTACCAAGCAGGCTTTGGATCTTCTGCAGGACAATTATCCCGAGTTCGTTGCCCGAAAGATTTTTATCAACGTGCCTTGGTGGTACTTTGCATTGAGCACAATGATATCGCCGTTCATCACACAGAGAACGAAGAGCAAGTTTGTGATCGCTCGGGCATCTAAAGTCACTGAGACTCTATTCAAGTACATATCCCCAGAATATGTGCCAGTGCAGTATGGTGGTTTGAATAGAGAAAACGATCAAGAATTCTCTGGTGCAGATGGCGGAGTTACGGAGTTGATCATCAAAGCAGGAACCAAGCAAATCATAGACATTCCAGCTACAGAGGTTGGTACCAGTCTGGTCTGGGACTTAACTGTTGTTGGCTGGGAAGTAAGCTACAAGGAAGAGTTCATCCCCAGCGCGGAGGGTTGTTATACTGTCATCATTCAAAAGGAGAAGAAAATGGCAGCCCATGAAGAAGCTGTTCGTAATTCCTTCAAAATTGGAGAGGCGGGAAAGGTTGTATTGACCATCGACAATCTTTCTTCCAGAAAGAAGAAACTCATCTACAGAAGCAAGGTGAAGAGGCATCTGTAATGGGCACGCGGTGCAATATGTGATTACTCTCTTATTTTGAGATGGCGTTTTTCAGGCTATGGAGGGCTGCTGTTAAATTATTTTAGATTTCGAAGTCCACAGGTTGAGTGTATGTCCAGGGCAGGACGGGCAGGCACAGTAGCCCTGGACTATTTTCTGCTGTCAAATATCCGCCTCGTCGCGGAAGTTGTAAAGCGTGTGTGGTAACCGTCGGCTGCGGTGCAGCCGATACAGGCATGTTCTATTCTATACAGGCATATTCTGACCGATTTGTGCGAATAATACGCTGTTTTGTGATAAGGATTTTACAATCTAGGC

Ace file of the UniGene biog3_v1.0_unigene7564 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20749	1/84
SustainPine v2.0	sp_v2.0_unigene25174	83/84

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CRAL_TRIO multi-domain protein	-	-	3.0e-20	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	patellin-4 isoform 1	-	-	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Cellular retinaldehyde binding/alpha-tocopherol transport	IPR001071	-	-
Sma3	CRAL-TRIO domain	IPR001251	-	-
Sma3		IPR008273	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQX3

Fln msg:

Fln protein: MNFLALFSSMAAGKDETSASAGEVETVKAEAGAVKTVEANGTDETVKAEVVEVAEANGNGAAESSPVIEPQLTSFKEESNFVSDLKESERKALQELKCRIEEAIMKNEFSEHENKKSDGKDGDAKETEAEKPADEKEAEKEELKVLETVTETDVKVGDVEVKNEENEVIVTEELSDKKAVEEQGPKVEESVVVETVTITSETLDASASGAENASEAKAVESGAVTGEAETVEVTVETFEAETEKFKAPDVYLWGVPLLHTKGDERTDVILLKFLRARDFKVQEAFEMLKNTVLWRKSFKTDSILEEDFGNDLDGVAYMNGYDKEGHPVCYNVYGVFQDKELYQKTFGTEEKRQRFLRWRVQLLEKGIQQLSFSPGGVNSMVQITDLKNSPGPGKKELRQATKQALDLLQDNYPEFVARKIFINVPWWYFALSTMISPFITQRTKSKFVIARASKVTETLFKYISPEYVPVQYGGLNRENDQEFSGADGGVTELIIKAGTKQIIDIPATEVGTSLVWDLTVVGWEVSYKEEFIPSAEGCYTVIIQKEKKMAAHEEAVRNSFKIGEAGKVVLTIDNLSSRKKKLIYRSKVKRHL*

Protein Length: 594

Fln nts: AGGGGTAAGATCTTCAAAATCTTGGAGTTCCA_-_ATGAATTTTCTCGCGTTGTTTTCATCAATGGCCGCCGGCAAAGACGAGACTTCTGCCTCAGCCGGTGAGGTCGAAACCGTCAAAGCCGAGGCAGGAGCGGTGAAAACGGTAGAGGCCAATGGAACTGATGAAACTGTCAAAGCCGAAGTAGTCGAGGTGGCGGAGGCTAATGGAAATGGTGCTGCAGAGAGCAGTCCTGTAATAGAGCCACAGCTGACTTCATTCAAGGAGGAGAGCAACTTCGTTTCTGATTTGAAGGAATCAGAGAGGAAAGCATTGCAGGAGTTGAAATGCCGGATCGAGGAAGCAATCATGAAAAATGAATTCAGCGAGCATGAAAACAAGAAATCCGATGGTAAGGATGGTGACGCCAAAGAAACCGAGGCAGAGAAGCCTGCAGATGAGAAAGAAGCGGAGAAGGAAGAACTGAAAGTTCTAGAGACTGTAACGGAAACTGACGTTAAAGTTGGAGACGTGGAGGTGAAAAATGAAGAAAACGAGGTAATTGTGACAGAAGAGCTTTCTGACAAGAAAGCTGTTGAAGAACAGGGGCCTAAAGTCGAAGAAAGCGTTGTTGTAGAAACCGTTACAATCACCAGCGAGACTCTGGATGCATCGGCTTCTGGTGCTGAGAATGCTTCAGAGGCTAAAGCTGTTGAATCTGGAGCTGTAACTGGTGAAGCGGAAACTGTCGAAGTCACTGTAGAGACTTTCGAAGCTGAAACAGAGAAATTTAAGGCCCCAGATGTTTATCTCTGGGGAGTTCCTCTGCTTCACACCAAAGGAGACGAGAGAACTGATGTGATTCTGTTGAAATTTCTCCGAGCGAGGGACTTCAAAGTACAGGAAGCCTTTGAAATGCTGAAGAACACCGTTCTGTGGAGGAAGAGCTTCAAAACGGACTCCATATTGGAAGAAGACTTCGGTAATGACCTTGATGGAGTAGCTTACATGAACGGATATGACAAAGAAGGTCATCCCGTTTGTTACAATGTTTATGGTGTCTTCCAGGATAAGGAACTTTATCAGAAGACTTTTGGCACAGAAGAGAAACGCCAGAGGTTCTTGCGATGGAGAGTTCAGTTACTGGAGAAGGGGATTCAGCAGCTCAGTTTCAGCCCTGGGGGCGTGAACTCCATGGTTCAGATCACTGATCTGAAGAATTCCCCCGGGCCTGGAAAGAAAGAGTTGAGACAAGCTACCAAGCAGGCTTTGGATCTTCTGCAGGACAATTATCCCGAGTTCGTTGCCCGAAAGATTTTTATCAACGTGCCTTGGTGGTACTTTGCATTGAGCACAATGATATCGCCGTTCATCACACAGAGAACGAAGAGCAAGTTTGTGATCGCTCGGGCATCTAAAGTCACTGAGACTCTATTCAAGTACATATCCCCAGAATATGTGCCAGTGCAGTATGGTGGTTTGAATAGAGAAAACGATCAAGAATTCTCTGGTGCAGATGGCGGAGTTACGGAGTTGATCATCAAAGCAGGAACCAAGCAAATCATAGACATTCCAGCTACAGAGGTTGGTACCAGTCTGGTCTGGGACTTAACTGTTGTTGGCTGGGAAGTAAGCTACAAGGAAGAGTTCATCCCCAGCGCGGAGGGTTGTTATACTGTCATCATTCAAAAGGAGAAGAAAATGGCAGCCCATGAAGAAGCTGTTCGTAATTCCTTCAAAATTGGAGAGGCGGGAAAGGTTGTATTGACCATCGACAATCTTTCTTCCAGAAAGAAGAAACTCATCTACAGAAGCAAGGTGAAGAGGCATCTGTAA___TGGGCACGCGGTGCAATATGTGATTACTCTCTTATTTTGAGATGGCGTTTTTCAGGCTATGGAGGGCTGCTGTTAAATTATTTTAGATTTCGAAGTCCACAGGTTGAGTGTATGTCCAGGGCAGGACGGGCAGGCACAGTAGCCCTGGACTATTTTCTGCTGTCAAATATCCGCCTCGTCGCGGAAGTTGTAAAGCGTGTGTGGTAACCGTCGGCTGCGGTGCAGCCGATACAGGCATGTTCTATTCTATACAGGCATATTCTGACCGATTTGTGCGAATAATACGCTGTTTTGTGATAAGGATTTTACAATCTAGGC

Fln Alignment:

Contig7564___MNFLALFSSMAAGKDETSASAGEVETVKAEAGAVKTVEANGTDETVKXXXXXXXXXXXXXXXESSPVIEPQLTSFKEESNFVSDLKESERKALQELKCRIEEAIMKNEFSEHENKKSDGKDGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELSDKKAVEEQGPKXXXXXXXXXXXXXXXTLDXXXXXXXXXXXXXAVESXXXXXXXXXXXXXXXXXXXXXXXXXAPDVYLWGVPLLHTKGDERTDVILLKFLRARDFKVQEAFEMLKNTVLWRKSFKTDSILEEDFGNDLDGVAYMNGYDKEGHPVCYNVYGVFQDKELYQKTFGTEEKRQRFLRWRVQLLEKGIQQLSFSPGGVNSMVQITDLKNSPGPGKKELRQATKQALDLLQDNYPEFVARKIFINVPWWYFALSTMISPFITQRTKSKFVIARASKVTETLFKYISPEYVPVQYGGLNRENDQEFSGADGGVTELIIKAGTKQIIDIPATEVGTSLVWDLTVVGWEVSYKEEFIPSAEGCYTVIIQKEKKMAAHEEAVRNSFKIGEAGKVVLTIDNLSSRKKKLIYRSKVKRHL
B8LQX3_________________MNFLALFSSMAAGKDETSASTGEVETVKAEAEVVKTAEANGTGETVKAEVVEAVEANGTGAAESSPVIEPRVTSFKEESNFVSDLKESERKALQELKCRIEEAILKNEFSEHENEKSDVKDGETKETEAEKPADEKEAEKEELKVVETVTEIDVKDGDVVVKNEETEVTVTEELSDKKAVEEQGPKAEESVAVETVTVSSDTLEVSASGAENASEATAVESEAVTGEQETVEVTVETFEAETEKFRATDVYLWGVPLLHTKGDERTDVILLKFLRARDFKVQEAFEMLKNTVLWRKSFKTDSILEEDFGNDLDGVAYMNGYDKEGHPVCYNVYGVFQDKELYQKTFGTEEKRQRFLRWRVQLLEKGIEQLSFSPGGVNSMVQITDLKNSPGPGKKELRQATKQALDLLQDNYPEFVARKIFINVPWWYLALSTMISPFITQRTKSKFVIARASRVTETLFKYISPEYVPVQYGGLNRENDQEFSGADGGVTELIIKAGTKQIIDIPATEVGTSLVWDLTVVGWEVSYKEEFIPSAEGCYTVIIQKEKKMAAQEEAVRNSFKIGEVGKVVLTIDNLSSRKKKLIYRSKVKRHL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1721	20		80		0.995493
1722	20		80		0.995493
1794	20		80		0.995493
1802	20		80		0.995493
1805		80		20	0.995493
1818	20			80	0.995493
1820	20	80			0.995493
1822			80	20	0.995493
1889	20	80			0.995493
1972	14	85			0.993533
1975		85		14	0.993533
2028	14			85	0.993533
2033		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain