SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7547

Length: 992 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7547

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6644	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	pre-mRNA-splicing factor SYF2 [Arabidopsis thaliana] gb\|AAC64217.2\| Expressed protein [Arabidopsis thaliana] gb\|AAM15083.1\| Expressed protein [Arabidopsis thaliana] gb\|AAM20452.1\| unknown protein [Arabidopsis thaliana] gb\|AAM91242.1\| unknown protein [Arab	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	60%
Blast2go	gcip-interacting family	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	mRNA splicing factor SYF2	IPR013260	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: F6I0Z7

Fln msg: Distance to subject end: 96 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 229 - 340

Fln protein: MGEDQRVHPECINASNPYHECVEYCFWKIAEAKERREKEETVSSKKDEELTDIGKGIKRKADNDLDPEGLSQDYPPAQDSENPEDAVAHANDLEDGMTNEDASGVDYTKLTGRQKKLFELRLRRNEARKANQTEILAEKKRQEPAQESRGISKQKWIEDKKKSLGKLLDANGLDLSKAYMLDTQEAAETKYKKWDKKPAPFGWDVFNQKSLYNAYKKRTKNIPLNADDI

Protein Length: 230

Fln nts: AATGTCGAGGAGTGATTTGGTTTTCTGGCACAGTCTCATCAAGAATATATTCTCAAGGGGTGGAGTGATCTGTAATTTTCTTCTAGCATTACAAGTTTTCGGGAGTGGCTCTGCCTGAAGAGGAAAGCATTAGTGTTGGAGTACGTATTTCAGAAAAGGTATTAATGGCTTTTAAAGATTATAACAGGTAATTAGTAGGAGCTGCAAATCGTGATTTCAGTTACAAAACGTATCGCGCTATTGGGGCGTCTGCGGGACATTTCTGTAATTTGAAGTGAGCTAGGGTTAGTTGGATTTTATCAGTA_-_ATGGGGGAGGATCAGCGGGTTCATCCGGAGTGTATAAACGCTTCAAATCCTTATCATGAATGCGTGGAGTATTGTTTTTGGAAAATCGCCGAAGCCAAGGAACGCCGGGAAAAGGAAGAAACAGTCTCTTCTAAGAAAGATGAGGAACTTACAGACATTGGTAAAGGAATAAAGAGGAAGGCTGATAATGATCTTGATCCAGAGGGCTTGTCTCAAGATTACCCACCAGCACAGGACTCAGAAAATCCTGAGGATGCTGTAGCCCATGCCAATGATCTAGAAGACGGGATGACTAATGAGGATGCCTCTGGGGTAGACTATACAAAACTAACTGGAAGGCAAAAGAAGCTGTTTGAGTTGAGACTTAGAAGGAATGAAGCAAGAAAAGCTAACCAGACTGAGATTCTAGCTGAAAAAAAGAGACAAGAGCCTGCACAGGAGTCACGAGGCATATCAAAACAGAAATGGATTGAAGACAAGAAGAAAAGTCTAGGGAAGCTGTTGGATGCAAATGGTCTGGATCTTTCAAAAGCTTACATGTTAGATACTCAAGAGGCAGCTGAAACAAAATACAAGAAATGGGACAAGAAGCCTGCTCCATTTGGATGGGATGTGTTTAACCAGAAGTCCCTATATAATGCCTACAAGAAGCGCACCAAAAACATCCCTTTGAATGCGGATGACATT

Fln Alignment:

Contig7547___MGEDQRVHPECINASNPYHECVEYCFWKIXXXXXXXXXXXTVSSKKDEELTDIGKGIKRKADNDLDPEGL-SQDYPPAQDSENPEDAVAHANDLEDGMTNEDASGVDYTKLTGRQKKLFELRLRRNEARKANQTEILAEKKRQEPAQESRGISKQKWIEDKKKSLGKLLDANGLDLSKAYMLDTQEAAETKYKKWDKKPAPFGWDVFNQKSLYNAYKKRTKNIPLNADD
F6I0Z7_________________MAGERRVHPDCINASNPYHECVEYCFRKIAEAKAQM-------DKKESEVMEAGSG--SGGGNDQYISGVPDQDKNTHDEGTDPEERSDDDND----QPVEEIEEVDFTQLTGRQKKLFELRLKMNEARKANQTAMVAEKKKMEAPPESRGISKQKWIEERKKKIGKLLDVNGLDMKKAYMLDTQEMAETKYKKWEKDPAPFGWDVFNQKTLYNAYKKRTKNIEVDIDE

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
148	33			66	0.997452
150			33	66	0.997452
151		66		33	0.997452
318			33	66	0.997452
324	33		66		0.997452
358	20			80	0.995493
362		80		20	0.995493
700	20	60		20	0.99255
703			80	20	0.995493
704	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain