SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7543

Length: 749 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7543

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2308	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribonuclease P [Arabidopsis thaliana] gb\|AEC10824.1\| ribonuclease P [Arabidopsis thaliana]	-	-	3.0e-30	40%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	26%
Blast2go	ribonuclease p	-	-	0.0	52%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribonuclease P/MRP, subunit POP1	IPR009723	-	0.0	-
Sma3	POPLD	IPR012590	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6H5E9

Fln msg: Overlapping hits, possible frame ERROR between 589 and 582, Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 300 aas, your sequence is shorter than subject: 243 - 825

Fln protein: LLP*ISQLSEAYLLAHADMLPNNAVLSMQVYDPRDTPAKQCKYLPRVSSVTHDDQTQWNPSVVSNIGESAGTNADIQTLGKNENEENVNLSGGKFTFTMSKEEIQNARNSHATHMENKTLWDSQSKGLFVDPPLTEHLLSQKRHQQHVAFFHLDDHLNEEGLGSVTLEKYQEGFSRSCPILLLKNDNKSSYSLxxxxIILPIRWVRAFWIPLVLGGVQVIGLRERRWLSIDAGLPSFPYRLP*

Protein Length: 244

Fln nts: TCTACTTCCCTAGATTTCTCAGCTTTCAGAAGCATATCTTCTGGCACATGCTGATATGCTGCCAAATAATGCTGTTCTGTCTATGCAAGTTTATGATCCTCGTGATACACCTGCCAAACAATGCAAATATCTTCCTCGAGTGTCTTCTGTGACTCATGATGACCAGACACAATGGAACCCTTCTGTAGTATCTAATATAGGGGAGTCAGCTGGTACTAATGCAGATATACAGACATTGGGGAAGAATGAAAATGAAGAAAATGTCAATTTATCAGGGGGTAAATTCACTTTCACCATGTCCAAGGAAGAAATTCAAAATGCACGTAATTCTCATGCTACACATATGGAAAACAAGACATTATGGGATTCTCAGAGCAAGGGTCTCTTTGTAGATCCCCCTTTGACTGAACATCTACTTAGCCAGAAGCGTCACCAGCAGCATGTAGCTTTCTTTCACCTAGATGATCACCTAAATGAAGAGGGCCTTGGAAGTGTGACATTGGAAAAATACCAAGAAGGATTCAGCAGATCGTGCCCAATTCTTCTTCTGAAGAATGATAATAAGAGTTCTTACAGCTTGxxxxxxxxxxxxATTATTCTTCCAATAAGATGGGTTCGAGCCTTTTGGATTCCTCTTGTCCTTGGCGGAGTACAAGTGATTGGATTAAGGGAGCGCCGGTGGCTGTCAATTGATGCTGGTTTACCATCATTTCCATATCGACTTCCCTGACTGCAAAGCCTATGAGACATT

Fln Alignment:

Contig7543___QLSEAYLLAHADMLPNNAVLSMQVYDPRDTPAKQCKYLPRVSSVTHDDQTQWNPSVVSNIGESAGTNADIQTLGKNENEENVNLSGGKFTFTMSKEEIQNARNSHATHMENKTLWDSQSKGLFVDPPLTEHLLSQKRHQQHVAFFHLDDHLNEEGLGSVTLEKYQEGFSRSCPILLLKNDNKSSYSxxxxILPIRWVRAFWIPLVLGGVQVIGLRERRWLSIDAGLPSFPYRLP
F6H5E9_________________QLTKCSSLDHEDQIPSCAILSLTVDDPRNLPEKKTAVVPEVAS-----------------------NRVLGDASENEAKENTSLEGN----------------------QDLDLWDARNG---FSPPVEENVLCMEKHHQRLAFFCLSD--SQSGI----LNTSSDAQHGSCPILLLKSNNQKGMIxxxxILPLSWVKAFWIPLVSNGAHAIGLREKHWIACEVELPYFPSDFP

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
263	80			20	0.995493
265	20		80		0.995493
269	80			20	0.995493
341		33		66	0.997452
343		66		33	0.997452
344	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain