SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7540

Length: 595 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene7540 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1342	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Inosine-5'-monophosphate dehydrogenase n=1 Tax=Picea sitchensis RepID=B8LQF1_PICSI	-	-	91%
FL-Next	sp=Inosine-5'-monophosphate dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	IMP dehydrogenase.	EC:1.1.1.205	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	75%
Blast2go	Drug metabolism - other enzymes	00983	75%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	75%
Blast2go	Metabolic pathways	01100	75%
Blast2go	Biosynthesis of secondary metabolites	01110	75%

Source	GOs	Term	Type	Identity
Blast2go	GMP biosynthetic process	GO:0006177	Biological Process	75%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	75%
Blast2go	IMP dehydrogenase activity	GO:0003938	Molecular Function	75%
Blast2go	metal ion binding	GO:0046872	Molecular Function	75%

Source	InterPros	Term	Type	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	IMP dehydrogenase / GMP reductase, conserved site	IPR015875	-	-
Sma3	IMP dehydrogenase	IPR005990	-	-
Sma3	IMP dehydrogenase/GMP reductase	IPR001093	-	-
Sma3	IMP dehydrogenase-related	IPR018529	-	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
129	20		80		0.995493
133		80		20	0.995493
253	80	20			0.995493
254		20		80	0.995493
255	80	20			0.995493
256			20	80	0.995493
276	25			75	0.996473
278	25	75			0.996473
279		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain