SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7538

Length: 822 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7538

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15240	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	D-3-phosphoglycerate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RYA3_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	megagametogenesis	GO:0009561	Biological Process	90%
Blast2go	ATP binding	GO:0005524	Molecular Function	90%
Blast2go	chloroplast	GO:0009507	Cellular Component	90%
Blast2go	membrane	GO:0016020	Cellular Component	90%
Blast2go	mitochondrion	GO:0005739	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	IPR006139	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	D-3-phosphoglycerate dehydrogenase	IPR006236	-	-
Sma3		IPR015508	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3		IPR017909	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXI5

Fln msg: Distance to subject end: 126 aas, your sequence is shorter than subject: 273 - 622

Fln protein: LAVMGFGKVGSEVARRAKGLGMHVIAHDPYAAADRARAVGVDLVSFDGAISAADFISLHMPLTPATDKVFNDESFRKMKKGVRIINVARGGVIDDEALVRALDSGIVAQAALDVFTKEPPVDNKLVQHEKVIVTPHLGASTIEAQEGVAIEIAEAVAGALMGELSSTAVNAPMVSAEVLSELSPYVSLAESLGRLAVQLVSGVRGVKSVKVIYASARAADDLDTRLLRAMITKGIIEPISDTFVNLVNADFIAKQRGFRIIEEKVPHDWKSGT

Protein Length: 274

Fln nts: ACTTGCAGTCATGGGTTTTGGAAAGGTTGGATCAGAAGTTGCTCGGCGTGCAAAGGGGCTAGGGATGCATGTTATTGCACATGACCCATATGCTGCTGCTGATCGAGCACGTGCTGTAGGTGTGGATCTAGTATCATTTGATGGGGCCATATCTGCTGCCGATTTCATTTCTCTCCATATGCCGCTGACTCCCGCTACAGATAAGGTTTTCAATGATGAAAGTTTTCGTAAGATGAAGAAAGGAGTCCGCATTATCAATGTCGCTAGAGGTGGCGTAATAGACGATGAAGCTTTAGTGCGAGCTCTTGACAGTGGCATTGTTGCTCAGGCAGCACTTGATGTATTTACAAAAGAACCTCCAGTAGACAACAAATTAGTCCAGCACGAGAAGGTCATAGTGACACCTCATCTGGGGGCAAGCACAATAGAAGCACAGGAAGGTGTAGCAATAGAAATAGCCGAGGCTGTTGCTGGAGCCCTGATGGGTGAGCTCTCTTCAACAGCTGTCAATGCTCCCATGGTCTCTGCTGAGGTTCTCTCTGAACTTTCCCCCTATGTAAGTTTGGCGGAAAGCTTGGGAAGGCTTGCTGTGCAGTTAGTGTCAGGAGTTCGTGGTGTGAAATCAGTGAAGGTGATCTATGCCTCCGCTAGAGCTGCCGATGATTTGGATACAAGGTTGCTTCGCGCTATGATTACTAAAGGGATTATTGAACCTATATCTGATACATTTGTGAACCTAGTCAATGCTGATTTTATTGCAAAGCAAAGAGGCTTCAGAATTATCGAGGAAAAAGTACCACATGATTGGAAAAGTGGGACATT

Fln Alignment:

Contig7538___LAVMGFGKVGSEVARRAKGLGMHVIAHDPYXXXXXXXXXXXXLVSFDGAISAADFISLHMPLTPATDKVFNDESFRKMKKGVRIINVARGGVIDDEALVRALDSGIVAQAALDVFTKEPP-VDNKLVQHEKVIVTPHLGASTXXXXXXXXXXXXXXXXXXLMGELSSTAVNAPMVSAEVLSELSPYVSLAESLGRLAVQLXXXXXXXXXXXXIYASARAADDLDTRLLRAMITKGIIEPISDTFVNLVNADFIAKQRGFRIIEEKV
A9NXI5_________________LAVMGFGKVGTEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFEEAITVADFISLHMPLTPSTEKIFNDETFAKMKKGARIVNVARGGVIDEDALVKALDAGIVAQAALDVFTVEPPEKDSKLVNHEKVIVTPHLGASTMEAQEGVAVEIAEAVVGALKGELAATAVNAPMVPAEVLSELAPFITLAEKLGRLAVQLVAGGSGVKSVKVTYSSARAGDDLDTRVLRAMITKGIIEPISSAFVNLVNADFIARQRGLRLSEERI

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
115	33	66			0.997452
235	20			80	0.995493
236		20	80		0.995493
238	80			20	0.995493
239			80	20	0.995493
244	25		75		0.996473
247			75	25	0.996473
524			33	33	0.997753
689		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain